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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.7NG176000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 378aa MW: 40361.1 Da PI: 7.4796 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7NG176000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.3 | 7.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
Pavir.7NG176000.1.p 14 KGPWTPEEDRKLLAYIEQHGHGCWRSLPAKAGLQRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 52.9 | 8.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
Pavir.7NG176000.1.p 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 378 aa
Download sequence Send
to blast |
MGRSPCCEKE GLKKGPWTPE EDRKLLAYIE QHGHGCWRSL PAKAGLQRCG KSCRLRWTNY 60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120
IDPVTHKPRS DALGAGGGAA GAQHARAAAH LSHTAQWESA RLEAEARLAR EARQRALAAS 180
ASVSAPRAPP GPSAAAHGLE SPTSTLSFSE SAALASVLEA HGAAAAAARA AMEPMQAYEE 240
AFKEHEQQQW GDHVVVHAGD AAFAGAGFTG LLLHGALNQQ DLRPAAGRHD ADADAGLQET 300
EEEKNYWDSI LNLVNSSSVS LPTSVVVPAP EAYSSSASLQ TSVVVSTPEA YSSSASLTRS 360
FEVPAPNPYS PAPAPEF*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JF951918 | 0.0 | JF951918.1 Triticum aestivum clone TaMYB16 R2R3-MYB protein mRNA, complete cds. |
