PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG147900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 432aa    MW: 45815.7 Da    PI: 9.4122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG147900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-20198247255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Pavir.7NG147900.1.p 198 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 247
                          7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-33197256IPR001471AP2/ERF domain
SMARTSM003804.8E-38198261IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-22198256IPR016177DNA-binding domain
CDDcd000181.28E-29198256No hitNo description
PfamPF008472.2E-13198247IPR001471AP2/ERF domain
PROSITE profilePS5103224.711198255IPR001471AP2/ERF domain
PRINTSPR003672.3E-11199210IPR001471AP2/ERF domain
PRINTSPR003672.3E-11221237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MRPLIARFGG CCRDERARGS EVQELKLSPT HARIDRSSPS DGRRRRQIDR QLTKVDPRRH  60
GKRPLPADEE EEEPPPPPPA KLEQLDVEEQ YHVSQLQGAT FISGSGGGGS SSSPAGAAGP  120
SPEAYAQYYY SARADHDATA VASALAHVIR ASPDQLPPQA FYAAGGAPGH QQGDHQQAAP  180
HHHAAAAAEE EQAGRRRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFDT AEDAAIAYDE  240
AALRFKGTKA KLNFPERVQG RTDLGFLVTR GVPDRHHHQG AAVMLSPPPP RPPHRQHQHQ  300
TVVPYPDLMQ YAQLLQAGGR GGGGDSAEAA TAAQQAAQAQ LMMLARGGGG GVNLPFGAAS  360
PFSPSPSPSS APQILDFSTQ QLIRPDPPSP AAAMSSSGAA PSTPSSTTTA SSPGGGAWPY  420
GGEHHRNKKD A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26197259467ATERF1
3gcc_A5e-26197259467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG147900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-135EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825288.11e-169uncharacterized protein LOC112900671
TrEMBLA0A3L6Q5N71e-178A0A3L6Q5N7_PANMI; AT-rich interactive domain-containing protein 1A-like isoform X3
STRINGPavir.Gb01735.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-22related to AP2 6l