PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG139200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1014aa    MW: 113487 Da    PI: 6.1885
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG139200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11751e-54121273117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n
  Pavir.7NG139200.1.p  12 EEaRTRWLKPSEVYYILQNHERFPITYEAPKQPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEKN 101
                          5569************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p fqrrc+w+Le ++e+ivlv+y+ev
  Pavir.7NG139200.1.p 102 PCFQRRCFWMLEPAYEHIVLVQYREV 127
                          ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.4437133IPR005559CG-1 DNA-binding domain
SMARTSM010764.9E-6810128IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-4613126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-7437526IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.45E-15437520IPR014756Immunoglobulin E-set
PfamPF018332.8E-7437507IPR002909IPT domain
SuperFamilySSF484032.49E-16464512IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-15632727IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-16632729IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.194634726IPR020683Ankyrin repeat-containing domain
CDDcd002041.30E-8639726No hitNo description
PfamPF127963.1E-6650727IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.553667699IPR002110Ankyrin repeat
SMARTSM00015100787809IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.144788817IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-6843893IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.712846875IPR000048IQ motif, EF-hand binding site
SMARTSM0001517847867IPR000048IQ motif, EF-hand binding site
PfamPF006120.015848866IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731869897IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-5870890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1014 aa     Download sequence    Send to blast
MSQSFDINVL REEARTRWLK PSEVYYILQN HERFPITYEA PKQPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEK NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSQLSNG PPESLSSLGY PHAIYGNQYL SSTSGTSEGS ESHQSYSNLS  180
SVTEVSSYSG NKEYNKDGGS LLSIPELGQT CLEQTTEVYW VDNGNSKTKY GLNVALKKIA  240
EQLSLGDDDD DYIYTNQVQP LGFATNTEPT DKKDGDQIKQ IQPEGTEKGL GRNIAPSWED  300
VLHSSSGLPI PSIYQSDVQY QQNSEYHPPG SLDSSDLRIQ LSAAKRFLLG PEASIGSPSS  360
NFMLRSKENG GTDILSAHES RLESSLNPDW KTKALLTFQS NSQGSEIRDL LFDRGQLEPY  420
SRADTRLTLG QTKQFDIREI SPEWAFSYEI TKVIITGDYL CDPSNLCWAV MFGDSEVPAE  480
IVQPGVLRCH TPLHSSGKLR VCITSGNREV CSEFKEFEFR SKPTSSGFSD LAPSSRSLKS  540
SEELLLLAKF ARMLLSENGS SEVPDSDPQS GQCPKLRMNE ELWDRLIDEL KLGCENPLST  600
VDQIMEELLK SRLQQWLSVK LKGFNGTASS LSKHDQGIIH LISALGYEWA LSSVLSAGVG  660
LNFRDSNGWT ALHWAAYFGW EKMVAALLAA GASATAVTDP TAQDPVGKTA AFLASERGHT  720
GLAGYLSEVS LTSYLASLTI EESDVSKGSA EIEAERAVES VSQRSAQLHG GTEDELSMKD  780
SLAAVRNAAQ AAARIQNAFR VFSFRKRQQK TARLRDEYGM TQEDIDELAA ASRLYHQAHA  840
SSGQFYDKAA VSIQKKYKGW KGRKHFLNMR RNAVKIQAHV RGHQVRKKYR TIVSTVSVLE  900
KVILRWRRKG HGLRGFRAEQ QPMVGAVEED DEEDDDFDDD EAVKVFRRQK VDQAVKEAVS  960
RVLSMVDSTE ARMQYRRMLE EFRQASAELG GSHEVTSIFD SDLELLGINN FML*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166890.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG139200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823459.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A2S3I6190.0A0A2S3I619_9POAL; Uncharacterized protein
STRINGPavir.Gb01963.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-144Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains