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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7NG083600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
G2-like |
Protein Properties |
Length: 539aa MW: 57248.3 Da PI: 7.0939 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG083600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 125 | 178 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
Pavir.7NG083600.1.p 125 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 178
8****************************************************7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MRGGKTGGGM GEVKEKVVME DGEKRSSEPP AVLDLNEGFS SEGCDGGEIG EDADDDNEEE 60 EDIDDEDGST SEVAGAGRSS SSNSSSTNHN SGSNNKDHDM NSSSKGEGGG DRAQTVRQYN 120 RSKLPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK 180 LDQSGHERAS VSSVFSPMDF HMRRGDHPFH DMFFQRAAGS AISSSLLHNG GFIGSRSAVV 240 SPEASRLYGL LHRRLPTMQT FDFKNYSNLR NQEWTFSQHA VAAARAGTTN DHGPAKGIIH 300 DMIFRKDGKP TSHLFDVRDA IASNRTLSAA AGAADHGRRV GSSDWIGSSS RPLSRTMSAA 360 ASTGFALGSL HPLSRGRAST GSNGYHPNGD ANTTSSEPLV TKKALGSRLE EHLEPKNPSK 420 VIGEMCTGTA AKRTKASMED NGGMPDLQLS LSPNVGGDSD KQAKKRRILS IALSEQEVDS 480 DKMLPLSLSL SLRGGDSGGE GSGGDAGRLE AAIGSSSSKK AALGLSTLDL TMSIKALE*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j4r_A | 4e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-18 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC243223 | 0.0 | AC243223.1 Panicum virgatum clone PV_ABa006-H05, complete sequence. |