PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG080900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 383aa    MW: 43009.9 Da    PI: 5.1863
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG080900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like604.9e-19169219455
              G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++W++ LH++F++a+e L G+  A P++i  lm+v+g+ ++h++SHLQkYR 
  Pavir.7NG080900.1.p 169 ICWNEYLHRKFLHALEIL-GEGAASPRNIEILMNVEGVNRKHIASHLQKYRK 219
                          79****************.9*******************************6 PP
2Response_reg52.33.1e-18171241107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          v++vd+++  ++  r++l   +y ++++ +++ eale l+ +   +Dl l+ ++m +++G+++l   r +++++++i+++ + +++++++
  Pavir.7NG080900.1.p  17 VIVVDEDKHHANSTRSMLCTLNY-HATAYTSPIEALEFLEGHAqeVDLALVAVNMEELHGFQFLDIVRDAHKNVQVIMMSNETTMDTMKR 105
                          799********************.***************777667********************************************* PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                          ++k+Ga+  + Kp+d   +
  Pavir.7NG080900.1.p 106 CIKLGARFLVNKPIDAHTI 124
                          **************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.9E-2212131No hitNo description
SuperFamilySSF521721.02E-2113131IPR011006CheY-like superfamily
SMARTSM004483.8E-815128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.60316132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-1617124IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.53E-1418121No hitNo description
Gene3DG3DSA:1.10.10.603.7E-17164220IPR009057Homeodomain-like
SuperFamilySSF466898.96E-13164222IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-17169220IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDERAKLCPA NGHGLSVIVV DEDKHHANST RSMLCTLNYH ATAYTSPIEA LEFLEGHAQE  60
VDLALVAVNM EELHGFQFLD IVRDAHKNVQ VIMMSNETTM DTMKRCIKLG ARFLVNKPID  120
AHTINNLWQH LDLKDYSRMD YIKNLLKGNG EAQDFSYLKE NTKTKKGYIC WNEYLHRKFL  180
HALEILGEGA ASPRNIEILM NVEGVNRKHI ASHLQKYRKR MEAGKQNSAS DARMCRNRGS  240
TSKSAKSHQE DPNTSLNSLN VQQEQMTADE DMPYAQTGSF SNNNAHAAMR RSIQFGTMYD  300
ESEYLYYSSG DEATEDGVDM MEDDGTSASS FTTQASTAEI FSADGTKDIL NNNSSEKQDR  360
QGDKVGKAIM LVDYSDSEDD EI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG080900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825245.11e-175two-component response regulator ORR29-like
TrEMBLA0A2T7CTM00.0A0A2T7CTM0_9POAL; Uncharacterized protein
STRINGPavir.Gb02032.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-22response regulator 10