PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7NG079200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 383aa MW: 43009.9 Da PI: 5.1863 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 60 | 4.9e-19 | 169 | 219 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++W++ LH++F++a+e L G+ A P++i lm+v+g+ ++h++SHLQkYR Pavir.7NG079200.1.p 169 ICWNEYLHRKFLHALEIL-GEGAASPRNIEILMNVEGVNRKHIASHLQKYRK 219 79****************.9*******************************6 PP | |||||||
2 | Response_reg | 52.3 | 3.1e-18 | 17 | 124 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 v++vd+++ ++ r++l +y ++++ +++ eale l+ + +Dl l+ ++m +++G+++l r +++++++i+++ + +++++++ Pavir.7NG079200.1.p 17 VIVVDEDKHHANSTRSMLCTLNY-HATAYTSPIEALEFLEGHAqeVDLALVAVNMEELHGFQFLDIVRDAHKNVQVIMMSNETTMDTMKR 105 799********************.***************777667********************************************* PP HHHTTESEEEESS--HHHH CS Response_reg 89 alkaGakdflsKpfdpeel 107 ++k+Ga+ + Kp+d + Pavir.7NG079200.1.p 106 CIKLGARFLVNKPIDAHTI 124 **************98766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 5.9E-22 | 12 | 131 | No hit | No description |
SuperFamily | SSF52172 | 1.02E-21 | 13 | 131 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.8E-8 | 15 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 25.603 | 16 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.0E-16 | 17 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.53E-14 | 18 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-17 | 164 | 220 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.96E-13 | 164 | 222 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-17 | 169 | 220 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MDERAKLCPA NGHGLSVIVV DEDKHHANST RSMLCTLNYH ATAYTSPIEA LEFLEGHAQE 60 VDLALVAVNM EELHGFQFLD IVRDAHKNVQ VIMMSNETTM DTMKRCIKLG ARFLVNKPID 120 AHTINNLWQH LDLKDYSRMD YIKNLLKGNG EAQDFSYLKE NTKTKKGYIC WNEYLHRKFL 180 HALEILGEGA ASPRNIEILM NVEGVNRKHI ASHLQKYRKR MEAGKQNSAS DARMCRNRGS 240 TSKSAKSHQE DPNTSLNSLN VQQEQMTADE DMPYAQTGSF SNNNAHAAMR RSIQFGTMYD 300 ESEYLYYSSG DEATEDGVDM MEDDGTSASS FTTQASTAEI FSADGTKDIL NNNSSEKQDR 360 QGDKVGKAIM LVDYSDSEDD EI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7NG079200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825245.1 | 1e-175 | two-component response regulator ORR29-like | ||||
TrEMBL | A0A2T7CTM0 | 0.0 | A0A2T7CTM0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb02032.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5920 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31920.1 | 1e-22 | response regulator 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7NG079200.1.p |