PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG076100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 702aa    MW: 79352 Da    PI: 10.3761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG076100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.5e-17300384187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+++++++lk+  l l+  f+ ++g+++++++tl+   +s +sW+v      k+g+y l++GW +F+k+n Lk gD+++F ++++
  Pavir.7NG076100.1.p 300 WIKKEINANSLKRE-LALSAAFCGAIGLPEHCTITLKTSMSSTESWQVLA-LPSKKGSYQLRNGWMRFCKENSLKIGDICTFNVIET 384
                          789999******98.**************99988888888999*****99.4666677*************************8765 PP
2B357.72.1e-18454538186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+ +++++l++  l l  +f++++g+ + + +tl+ +  s  sW+v+ i  k+ ++y+l kGW++F+++n Lk gD+++F +++
  Pavir.7NG076100.1.p 454 WIKKVINAHTLEKY-LALATSFCDAIGLRESCMITLKTTMDSTISWQVRGISIKNCRSYLLIKGWRRFCQENSLKKGDICTFNVIE 538
                          68999999999997.**************99988888888899***************************************9765 PP
3B348.31.8e-15609690286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +k++++  + k+ rl+lp  f++++g+ +++++tl+   +s  sW+ ++   ++s+++v  +G ++F+++ng+k+gD+++Fk ++
  Pavir.7NG076100.1.p 609 IKKEINMWAIKN-RLYLPPVFCKAIGIREPCKITLKTSMSSTTSWQARVVPYNRSSHHV--SGLQRFCRDNGIKVGDVCTFKIVD 690
                          677777777776.6**************99998888888999*******6666666655..8********************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.4587100IPR003340B3 DNA binding domain
SMARTSM010190.8412100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-718102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-818102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.572130225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-11132226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-12133225IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0024133225IPR003340B3 DNA binding domain
CDDcd100177.69E-6133222No hitNo description
SuperFamilySSF1019364.51E-16296394IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-16297393IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-4301397IPR003340B3 DNA binding domain
PfamPF023627.7E-13301384IPR003340B3 DNA binding domain
CDDcd100173.08E-9306379No hitNo description
PROSITE profilePS5086310.856331395IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-18449550IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-19450548IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.364453550IPR003340B3 DNA binding domain
SMARTSM010199.6E-7455550IPR003340B3 DNA binding domain
CDDcd100171.02E-10455534No hitNo description
PfamPF023622.4E-14455539IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-15605698IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0021609701IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-14618698IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-10618687No hitNo description
PfamPF023625.8E-13618698IPR003340B3 DNA binding domain
PROSITE profilePS508639.093620701IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MPPSAAAARH PRVLLPFTSD TLRIPDELAA EVGSDEALVV GPTGGKAKPW RVEVGWDGDG  60
AFLGRGWPGF AAACGVAPRW LLVLRHRGHG VLSVKGFDAD SCLLREHGAR PPPPSAAVEA  120
TTGSQDTARK LQFLRVLPKD FREKMLIPAK IVQYIPKEHL DYRKAIVSGP LGKVSPIELE  180
MNQSGVFFRG GWSQFLVLHG ITEDNSLLLR YEGNMMFTVK VFEADGHQRE SKHKDIGTQQ  240
VSTLPDIRER QEESSVSIQK RCNSNWLNNG GQKMQKGPIT RLKKAPLWRK SVFKIGPPSW  300
IKKEINANSL KRELALSAAF CGAIGLPEHC TITLKTSMSS TESWQVLALP SKKGSYQLRN  360
GWMRFCKENS LKIGDICTFN VIETTMWHVV VTRCKEKMNQ LCYQEYPSIS SRMHMSKSKW  420
PRSRRNKRSN GSRSFLNKTA FHRKSFYEIG PPSWIKKVIN AHTLEKYLAL ATSFCDAIGL  480
RESCMITLKT TMDSTISWQV RGISIKNCRS YLLIKGWRRF CQENSLKKGD ICTFNVIETT  540
VWHVIITRYK EKIDQPCYEK PSASSMKRKR EDDRSISEEQ KRPKGSMTSW CKASSKTGCI  600
FEIGPPAWIK KEINMWAIKN RLYLPPVFCK AIGIREPCKI TLKTSMSSTT SWQARVVPYN  660
RSSHHVSGLQ RFCRDNGIKV GDVCTFKIVD TTLWHVIIEP R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.289721e-84callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG076100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825039.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A3L6PW370.0A0A3L6PW37_PANMI; Uncharacterized protein
STRINGPavir.J14658.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-12B3 family protein