PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG075500.7.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 425aa    MW: 47654.1 Da    PI: 9.6813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG075500.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19181265187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+ ++ ++lks+ l+l k+f++++g+  ++   ++l++   s +sW+v    r + ++ yv++ GWk+F+++n LkegD+++F+++g+
  Pavir.7NG075500.7.p 181 WIKKVINTSTLKSH-LSLAKDFCNAIGLRGPC--VIRLKTsmDSTESWQVHG--RTSENSsYVISHGWKRFCQENSLKEGDMCTFYVVGT 265
                          78999********9.***********999666..56666622666*******..5554445*************************8763 PP
2B358.71e-18328415191
                          EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ++k++++ +++k+ + ++lp  f+e++g+ +++++tl+   +sg sW+ ++   k+ + ++ ++GWk+F+++n++kegD+++F +++   
  Pavir.7NG075500.7.p 328 WVKKEINTSTMKHvHVFSLPLAFCEAIGLREPCTITLKTSMSSGTSWQTRVVPYKY-CNHLGGSGWKKFCQENRIKEGDVCTFNVVE--- 413
                          67888888888888999*************99999999888**********54555.57899*********************9654... PP

                          E. CS
                   B3  90 fe 91 
                          ++
  Pavir.7NG075500.7.p 414 TK 415
                          33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-155107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-167107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.7699105IPR003340B3 DNA binding domain
CDDcd100176.13E-910102No hitNo description
SMARTSM010194.9E-412105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-18176275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-19178274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407180276IPR003340B3 DNA binding domain
PfamPF023624.9E-15181271IPR003340B3 DNA binding domain
SMARTSM010197.7E-8182276IPR003340B3 DNA binding domain
CDDcd100172.64E-12182266No hitNo description
SMARTSM010190.0022329424IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661329424IPR003340B3 DNA binding domain
PfamPF023627.0E-16329421IPR003340B3 DNA binding domain
CDDcd100171.60E-12330409No hitNo description
SuperFamilySSF1019364.12E-17331423IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-17332423IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSSTDASRRP QFISVLAPDS MEKLLIPAKF VQNYMSKGLM NNCMAVLFGP FGKICQVELK  60
INGPDNFLSG GWSQFLALHG ITETHCLLLR YEGNMAFTVK VFGPDGCQIK SKHNGVRMQQ  120
ISTVLNMEKQ QELPSASIQK CERKKDQLCS EERKKRKASM TSLEKAPLQK KSFYEIGPPS  180
WIKKVINTST LKSHLSLAKD FCNAIGLRGP CVIRLKTSMD STESWQVHGR TSENSSYVIS  240
HGWKRFCQEN SLKEGDMCTF YVVGTTLWHV VIMRCKEKQE TPSAASSKSK TDNYISSEEQ  300
KRPNGPMTSS NKASSKTICA FEIGPPAWVK KEINTSTMKH VHVFSLPLAF CEAIGLREPC  360
TITLKTSMSS GTSWQTRVVP YKYCNHLGGS GWKKFCQENR IKEGDVCTFN VVETKLWHVV  420
IARQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142156RKKDQLCSEERKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG075500.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808159.11e-147putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A0A9RFZ71e-166A0A0A9RFZ7_ARUDO; Uncharacterized protein
STRINGPavir.Gb02050.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.14e-16B3 family protein