PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG074000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ARR-B

Protein Properties

Length: 318aa MW: 36348.3 Da PI: 5.8567

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG074000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	45.9	1.3e-14	171	221	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +l Wtp L ++F++a+e LG e AtPk i +m+v+++ +++v HLQk+R Pavir.7NG074000.1.p 171 QLIWTPFLQQKFLQALELLG--EAATPKMIQLIMNVNSVDRNQVSAHLQKHRK 221 689**************4..67*************************96 PP
2	Response_reg	40.4	1.6e-14	16	123	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vd++p ++ +l k ++ +v +++++ +al+ +k+++ ++ l+ ++m +m+G+e+l re +++l++i+++ + + +++++ Pavir.7NG074000.1.p 16 VLVVDENPCDADTASYMLAKLNF-QVMVFTSPIKALKFVKDHKedIHFALVALNMKEMHGFEFLDISRELHKNLQVIMMSYEITWPTMKR 104 89*******************.***********888877999************988******************* PP HHHTTESEEEESS--HHHH CS Response_reg 89 alkaGakdflsKpfdpeel 107 +++Ga f+ Kp d e + Pavir.7NG074000.1.p 105 SVELGACFFIKKPLDAEMI 123 ***********999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	2.7E-22	12	131	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	4.4E-22	13	138	No hit	No description
SMART	SM00448	6.3E-8	14	127	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	26.241	15	131	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.1E-13	16	123	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	5.73E-15	17	131	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-14	167	225	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-8	170	225	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-14	172	222	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGTQRTEGQH RDKLSVLVVD ENPCDADTAS YMLAKLNFQV MVFTSPIKAL KFVKDHKEDI 60 HFALVALNMK EMHGFEFLDI SRELHKNLQV IMMSYEITWP TMKRSVELGA CFFIKKPLDA 120 EMINDLWQHL HIRNRREKIE DLFQGIEGKS DDVFMSDNKF RESTNKQKVT QLIWTPFLQQ 180 KFLQALELLG EAATPKMIQL IMNVNSVDRN QVSAHLQKHR KKMEKELRNN TSAKKCSNGA 240 SSSQPNPSQY DPEIQSVDTS DEDMSWDQTE TTNEVQGENN TIEAMRRALR LGTVFDGSQL 300 VSDPSGEQAS KGEVDMM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG074000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825246.1	1e-144	two-component response regulator ORR29-like
TrEMBL	A0A2T7CTG8	1e-175	A0A2T7CTG8_9POAL; Uncharacterized protein
TrEMBL	A0A2T8IBT2	1e-174	A0A2T8IBT2_9POAL; Uncharacterized protein
STRING	Pavir.Gb02311.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5920	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	7e-21	response regulator 11

Link Out ? help Back to Top
Phytozome	Pavir.7NG074000.1.p