PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG066100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 95aa MW: 9696.95 Da PI: 4.3111

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG066100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	68	3.3e-21	2	47	28	73
TCP 28 caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Pavir.7NG066100.1.p 2 VAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAP 47 8*************************************66666333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	19.483	1	36	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.1E-16	2	45	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MVAARVFQLT RELGHRTDGE TIEWLLRQAE PSIIAATGTG VTPEEAPPAP VPVSPVAATA 60 SLMPVPYYTA LLMQPPPTAD SASGSGTAAQ ANNN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.6609	9e-35	callus\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269\|PubMed:9338963}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG066100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975168.1	2e-54	transcription factor PCF1-like
Swissprot	O23875	2e-33	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A3L6Q550	4e-55	A0A3L6Q550_PANMI; Transcription factor PCF1-like
STRING	Pavir.J20370.1.p	8e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-20	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG066100.1.p