PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG061900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 524aa    MW: 60772.9 Da    PI: 9.2205
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG061900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.5e-0724536190
                 FAR1 61 gCkaklkvkkekdgkwevtkleleHnHela 90
                         gC+a+++ + +k+g+w v+k++leHnH la
  Pavir.7NG061900.1.p 24 GCDARVQFNISKEGVWTVQKVKLEHNHYLA 53
                         8**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105515.4E-15153209IPR018289MULE transposase domain
PROSITE profilePS509669.557328360IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-4335362IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MYNTYARQVG FSVRKSRTKH CLDGCDARVQ FNISKEGVWT VQKVKLEHNH YLASPDKSHK  60
LRSQREVIEA NRKLIGQIRQ VGMKPGQVFD FIKEHYGGED KVSFSKMDCF NEIGRDPTFF  120
NAVQVDKEDG RIANFIWADG QSIMDYKCFG DALSFDTTFQ TNKFEMPFAL ILGTNHHKQT  180
IIFGCALLFN KTMESFVWLF ETFLTAICIY EDRSETYFIE KWDELLAKYN LENNSWMANL  240
YSLRAKWAAV YRDSFTADMN STQRSEGMNN VFKKRFRRKL GFSELLVECE KVAASLSYIP  300
NLPMLKTAAE SYTRRMYSEF EEEFRKQFTL SYRTITCSCR MFECIGLLCK HDLRVYNMNG  360
VYILSSQYIL PRWTKYAKSG FYIPKQGTDE VDLKTQAALV SRQATSLALK CSSSKELLDK  420
LQKAMHDLNF EADNYLSEMH EKSNESPTPN ECIREPLNGV ISFKIPKVLK GAKQTRFKNV  480
VEKNPENKKK KKGAQKKGND LPTNFCLCVK IHFKLLSYIF ECR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487496KKKKKGAQKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG061900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438310.20.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021305877.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021305880.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021305881.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLQ10HU30.0Q10HU3_ORYSJ; Os03g0576100 protein
STRINGSb06g016820.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-60FAR1-related sequence 5