PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG001200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 709aa    MW: 82256.2 Da    PI: 5.8243
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG001200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.3e-17105185290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          f n Y++ +GF v k +++k+      +k t++C+k+ k++e++ + +++r+++a +rtgC  +l+vk+   gkwe+t +++eHnH+l+
  Pavir.7NG001200.1.p 105 FVNVYGQVTGFVVFKGRNYKH------KKITLQCNKSKKAKENEIR-QRKRKRNAIERTGCPMSLTVKLV-AGKWEITAVQNEHNHPLS 185
                          7799***************99......4678*********999998.9**********************.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-15105185IPR004330FAR1 DNA binding domain
PfamPF105513.0E-21309401IPR018289MULE transposase domain
PROSITE profilePS509669.124592628IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MESYMAVIVE KAPPLQLSGA GTSMLSEIQT ADGDEAFIQE LEQENGNHIL NDEPDDDLNE  60
CQEDTAEAEV DCDEDYFFPS PDEVEQARPP EVGMVFATLE DAHRFVNVYG QVTGFVVFKG  120
RNYKHKKITL QCNKSKKAKE NEIRQRKRKR NAIERTGCPM SLTVKLVAGK WEITAVQNEH  180
NHPLSNSPSL TRFFLSHKYM SDEERNFSRI LQETKIKPAK IMQIFRKLRG KFKNIPVSKM  240
AVSNLEQFDR LMKTENTDIE STLEHVRRLQ KEQPGFYYAI RTDGDNTVRS IFWTDAQARL  300
DYALYGDFIS FDTSYSTIEY DMLFALLIGN NGHGKTTVFG WALLEDGRAE TFSWLFRTFL  360
DVMDGKKPNT ILTHQDSDIT KSIAEVFHTS FHRFDMWHVM RKATDELGSF MAHRVGMETE  420
VTHLVTNSLA TDEFENGWQA MLQKYDAASN AHLDLMYQTR LMWVPVYFKH VFSPFTRSNG  480
CSMSKNSIFK DYVQQNDTIE TFISQYDIFQ EEAVSIEDGD RFESTLKMPT YSTRHPIERH  540
AAEIYTMGIF LRFQKELLDA SAFNAFEKEK NVMYTVKKAL DYEDAEFLRD SFAVEVDLKT  600
NMFNCICSKF ERDGIVCCHV LRLFTQFCIN KIPEHYIKPR WTRKFREQEL QKYCSEKIGS  660
AVSQSTLRYA MIMNRMADSC ATVSKDPDRS KIFLEEHERI LQKLTDRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.66950.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG001200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825589.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3L6PW510.0A0A3L6PW51_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGPavir.Ga02637.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-81FAR1-related sequence 5