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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7KG421100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
AP2 |
Protein Properties |
Length: 462aa MW: 48787.7 Da PI: 7.0459 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG421100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.6 | 5.7e-17 | 110 | 159 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Pavir.7KG421100.1.p 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 159
78*******************......55************************997 PP
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2 | AP2 | 46.3 | 1e-14 | 202 | 252 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g
Pavir.7KG421100.1.p 202 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 252
89********.7******5553..2.26**********************99776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010073 | Biological Process | meristem maintenance |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0048316 | Biological Process | seed development |
GO:0048481 | Biological Process | plant ovule development |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 462 aa
Download sequence Send
to blast |
MWDLNDSPAA EATPPSPSAD DSGASSSSAA AHVDIPDDAD DDSAADAVVT RQFFPAPAPA 60 AAAGPRGGWL RLSAAAPPPA AAANGATPAG PAGASAASKK SRRGPRSRSS QYRGVTFYRR 120 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YDDDMKQMGN 180 LSKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA 240 RAYDRAAIKC NGKDAVTNFD PSIYAEEIEP AAAKGGDEHN LDLSLGSSAG SKRGSLDGGD 300 DETSDQRVPM AFDLDWQTAA ARSTKAKFDA SSKQPQMPPP PPPAFQAGHH LAFDPRQHQQ 360 FLGNGADPGT AGGLSLAIGG AGGGHWPPHL QQQQQQQQRL LHGWGIGGGT SWPLPPHPPP 420 PTNAAAATAA AASSRFPPYV TTQGPPSWAQ QNGFHSLARP T*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In developing panicles, highly expressed in the spikelet abscission zone (AZ) and the inner floral organs of 2 mm long spikelets. Later present at weak levels in the apiculus as well as in the palea and lemma to progressively fades out in 8 mm long spikelets. {ECO:0000269|PubMed:22408071}. |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, nodes, sheaths, panicles and young spikelets. Accumulates in the spikelet abscission zone (AZ) via a positive regulation by the transcription factor SH4. {ECO:0000269|PubMed:22408071}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT056188 | 0.0 | BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds. |