 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.7KG399200.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 448aa MW: 46648 Da PI: 7.1431 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG399200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 15 | 4.4e-05 | 336 | 373 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++ +++ L++l+ + +K + a++L +++eYIk L
Pavir.7KG399200.1.p 336 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 373
677888999*******998.....8****************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MGDHAEMLHA APAVVYSGAG AGGAAPHGGG WWNAAVPAPT CSTDLAGFGT WSAALSASYD 60 IAVEGGNKAK SATTASSESP GNNSSVTFQE PAGVADPVVG IGAAVHQQPL AAGYTDWTNN 120 PYMSGGATLH GFLQDCHQDM SSRTEQQSPM AASSLVNPAS NNLALQGHHQ EQDHHHQQLL 180 SSFGSDLLLS PTSPYGFQSS SLLRSLMEPT APAAAKTALP GFQQYDQYGQ QAAPAVARFA 240 PGAIREPLQF TNDAPFWNSS AAGFGVPAAA AAPDHASVRS VKPSPAPRAA TLALKTALEG 300 VGESSSITTK KKANGEPAFK KPRLQTPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA 360 SVLHETIEYI KFLHDQVGAL SAPYLKNGHQ VHVPQLQSSS PEKSKDSHGQ ISLKGRGLCL 420 VPISSTFAVA TSEVPVDFWT PFGANFR*
|