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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7KG397100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 177aa MW: 19144 Da PI: 9.7949 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG397100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 15.1 | 4.3e-05 | 66 | 103 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++ +++ L++l+ + +K + a++L +++eYIk L
Pavir.7KG397100.1.p 66 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKIL 103
77788899********998.....8***************976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MMDRLLTDGL VSSTGFLLPS PDKFSTSLEG VGESSSIINK KKANGEHAFK KPMLQTPSPL 60 PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHETIEYI KILHDQVGAL SAPYLKNGHQ 120 VHVPQLKSSS PEKSKDSHGE ISLKGRGLCL VPISSTFAVA SEVPVDFWTP FGANFR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068256 | 5e-99 | BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Chen HC, et al.
The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]
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