PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG362100.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 406aa    MW: 44263.9 Da    PI: 8.4433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG362100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.9e-07138160223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +CpdCg+ F r+++L+ H++  H
  Pavir.7KG362100.3.p 138 TCPDCGQIFVRQETLQLHQSItH 160
                          7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.847137161IPR007087Zinc finger, C2H2
PROSITE patternPS000280139160IPR007087Zinc finger, C2H2
SuperFamilySSF563993.93E-15162334No hitNo description
Gene3DG3DSA:3.90.228.103.1E-12165404IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563993.93E-15366404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAMKKKLVMS RSSNKKPEKD GRATKKQSRE AESPSYRLAL KSIFSCRNSG QQQHRAPLET  60
AGKRRPSVSG SSCERKPPQS EELPLESSKQ LQLQRGGSSS SSSGGSFRLR RLSGCYECHM  120
VVDPVSGGGS SSSMRATTCP DCGQIFVRQE TLQLHQSITH AVCELGADDT SRNIIEIIFQ  180
SSWVKKQRCK VERILKVRNT PRTLAAFEEY RDAVKAKAAR QITKHPAARC SADGNELLRF  240
HCASLACALG LNGATHLCDG DGGGCGACAI IRDGFVIRNR NAAGVWTMAT SGRAHDDAVE  300
YLEEEEEERS RAMLVCRVIA GRVKRRRRQP RIINEEEEGS SAAAAEEGSS SAAAQHEQHD  360
GVDDDDLQEF ESVAGSAPGV YSNLEELMVF NPRAILPCFV VVYKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328GRVKRRRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG362100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682185e-33EU968218.1 Zea mays clone 316720 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824982.11e-160uncharacterized protein LOC112900370
TrEMBLA0A3L6PV111e-165A0A3L6PV11_PANMI; Uncharacterized protein
STRINGPavir.Ga00578.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-62C2H2-like zinc finger protein