PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG344000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 335aa    MW: 37957.1 Da    PI: 10.355
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG344000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.41.7e-1686164190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ e GF vr ++ +k+  ++  tk + vCs+eg++++++          ++ rt+C ak+++++++d+ w++++++  HnH l+
  Pavir.7KG344000.1.p  86 DFYNLYSWEKGFGVRFDRGRKN-ASKYQTKLDIVCSCEGTSKNSN----------SSIRTDCAAKIRLHRRSDHAWYISSVNDTHNHRLT 164
                          6*****************9999.666699**********988765..........559*****************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1286164IPR004330FAR1 DNA binding domain
PfamPF105519.8E-7286326IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MHRRQLKKRV GACRAQASEL MCQSRQTSLD LRRGPGARNG PDYRDAPSEE SAITRALRRA  60
ATAPLGAPIF FPHEGTTFNS HEKARDFYNL YSWEKGFGVR FDRGRKNASK YQTKLDIVCS  120
CEGTSKNSNS SIRTDCAAKI RLHRRSDHAW YISSVNDTHN HRLTEAYSEN KQWKSHGYID  180
PSTKDLIKKL RENNISVGRI CNILGVSDGG SRARMRKESV RSICAKLAQE NMRDDIGKTL  240
RLLDKMKETD PGLEVRFQID SGGRLKTMLW CTGKNRLDYA TFGDAITFDT TYRTNLYSLP  300
FGLFMGVNNH FQSIVLGGLL LTSEKNIRLR MGIY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG344000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822596.11e-134protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_025822597.11e-134protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A0A9TKT41e-121A0A0A9TKT4_ARUDO; Uncharacterized protein
STRINGPavir.J17524.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-25FAR1-related sequence 11