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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG343600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 21578.6 Da PI: 8.7479 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp r +r++lg+f+tae Aa+a++aa++ ++g Pavir.7KG343600.1.p 21 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHFRG 71 689*******.**********8...2.35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-19 | 21 | 81 | No hit | No description |
SMART | SM00380 | 5.1E-36 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.54 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAPKNSALPP ASAATDGMME PRFRGVRKRP WGRYAAEIRD PARKARVWLG TFDTAEAAAR 60 AYDAAALHFR GPKAKTNFPV AFAAGAHPPP PKMLAVSPSS STVESSSRDS PAASPAAAPA 120 LPAPSLDLSL GMPPMVAAQP FLFLDPRLAV TVAVPAPVPC RPAIVAGTNK ATCREDEQSD 180 TGSSSSVVDA SPAVDVGFDL NMPPPAEVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 17 | 86 | 9 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.109 | 0.0 | callus| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG343600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823499.1 | 1e-107 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2T8IDR9 | 1e-105 | A0A2T8IDR9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00485.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 6e-23 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG343600.1.p |