PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG340900.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 847aa    MW: 96522.6 Da    PI: 7.1749
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG340900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.64.1e-2389172190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++Y +YA ++GFsvrk    k+++n    +r + Cs+eg r++++ k     r+r+etr+gC a++ +k++ +gk+++t+++++HnH+la
  Pavir.7KG340900.3.p  89 EYYVSYAGNMGFSVRKGWLDKTSKNS-NRSRVYICSREGLRSKNDAK-----RSRPETRMGCPARIAIKLTPSGKYRITEFVEDHNHQLA 172
                          69*******************97666.899************99887.....9***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2089172IPR004330FAR1 DNA binding domain
PfamPF105519.8E-25268361IPR018289MULE transposase domain
PROSITE profilePS5096610.064535582IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MLRLICSLCF CQNDHKFVTE ICTVLQKMSS YRLSCPRFCS VRAFVFPQTA DNPEGKAEEE  60
PELPPEVVSN AGGVPIVGMV FESEEKACEY YVSYAGNMGF SVRKGWLDKT SKNSNRSRVY  120
ICSREGLRSK NDAKRSRPET RMGCPARIAI KLTPSGKYRI TEFVEDHNHQ LAAPFDIEML  180
KSQRMLAKAQ PGSQASGIPP GYKNYLRSKS TKDMKSGDLR ALMDYFRRMK SVNPSFYYAI  240
QVDENDKVAN VFWADARSIM DYHYFCDVVC FDMIYKQNDC SRPLALFLGM NHHRQMVIFG  300
AAFLYDETVE SFKWLLETFK SAMCGKHPKT ILTDRSAPLK EALGLTWPGT MHRFCVWQMY  360
QSTVKSVAHM FGTSEEFTHD FRHCVFDIED EQEFVDTWNM IMEKYNLREK ELLIKLYEDR  420
EHWAIPYNRQ IFSGDIQSML HTENVGTRLK EYLGCEADLS SFLKFFQCSA EKRRQEEMQA  480
DYQANQGVPR IPLPFLWQAA NLYTPINFDL FRRECELSID CMAYGCGEFG SFSEYMITVK  540
NKTKDQLVRF DLSNGTVACT CKKFENAGLL CCHILKVYEL RNVKEIPPQY FLKRWRKDAK  600
LVAMDEADGF NFDGDTKFSV AGRYAALCRL FYKIAAKAAE NIETFALMAN QSDQLLAEVE  660
GTLRSTLADK SSGHSFTGQL THMAQNDYLL NSSHEALGST GKKKCEVTRH RNDPETNKRK  720
KARTGQSDET KGGTSGAMNI TPGSIQTEPR NTSNPFIPDQ LMQGHHYVLG HNFGLGISQN  780
LNDNLNQFGQ ASSFSTLHQQ PFPGNGQLSQ RYPGDMHALQ FVETTPEIDH QNGDDGQSSI  840
PVWDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1701720KKKCEVTRHRNDPETNKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.332271e-100callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG340900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825112.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T8IDX40.0A0A2T8IDX4_9POAL; Uncharacterized protein
STRINGPavir.Ga00446.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-108FAR1-related sequence 5