PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG340900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 951aa    MW: 107684 Da    PI: 8.0411
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG340900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.44.8e-23193276190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++Y +YA ++GFsvrk    k+++n    +r + Cs+eg r++++ k     r+r+etr+gC a++ +k++ +gk+++t+++++HnH+la
  Pavir.7KG340900.1.p 193 EYYVSYAGNMGFSVRKGWLDKTSKNS-NRSRVYICSREGLRSKNDAK-----RSRPETRMGCPARIAIKLTPSGKYRITEFVEDHNHQLA 276
                          69*******************97666.899************99887.....9***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-20193276IPR004330FAR1 DNA binding domain
PfamPF105511.2E-24372465IPR018289MULE transposase domain
PROSITE profilePS5096610.064639686IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011661688IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MATPSTSDDP AAAGEPAPTP SLEPTQRRHP TSRISHIVRT YLDLSSSKKR RAFPKSQPKA  60
GGQETRAAED ETDGSEAGQP SSHPSRLLRE LGIRVSRYTH EERRDIILRY MQKRSGRQAV  120
NRAASKVPSR QALAERRRRG AGGKFLGKED AQTADNPEGK AEEEPELPPE VVSNAGGVPI  180
VGMVFESEEK ACEYYVSYAG NMGFSVRKGW LDKTSKNSNR SRVYICSREG LRSKNDAKRS  240
RPETRMGCPA RIAIKLTPSG KYRITEFVED HNHQLAAPFD IEMLKSQRML AKAQPGSQAS  300
GIPPGYKNYL RSKSTKDMKS GDLRALMDYF RRMKSVNPSF YYAIQVDEND KVANVFWADA  360
RSIMDYHYFC DVVCFDMIYK QNDCSRPLAL FLGMNHHRQM VIFGAAFLYD ETVESFKWLL  420
ETFKSAMCGK HPKTILTDRS APLKEALGLT WPGTMHRFCV WQMYQSTVKS VAHMFGTSEE  480
FTHDFRHCVF DIEDEQEFVD TWNMIMEKYN LREKELLIKL YEDREHWAIP YNRQIFSGDI  540
QSMLHTENVG TRLKEYLGCE ADLSSFLKFF QCSAEKRRQE EMQADYQANQ GVPRIPLPFL  600
WQAANLYTPI NFDLFRRECE LSIDCMAYGC GEFGSFSEYM ITVKNKTKDQ LVRFDLSNGT  660
VACTCKKFEN AGLLCCHILK VYELRNVKEI PPQYFLKRWR KDAKLVAMDE ADGFNFDGDT  720
KFSVAGRYAA LCRLFYKIAA KAAENIETFA LMANQSDQLL AEVEGTLRST LADKSSGHSF  780
TGQLTHMAQN DYLLNSSHEA LGSTGKKKCE VTRHRNDPET NKRKKARTGQ SDETKGGTSG  840
AMNITPGSIQ TEPRNTSNPF IPDQLMQGHH YVLGHNFGLG ISQNLNDNLN QFGQASSFST  900
LHQQPFPGNG QLSQRYPGDM HALQFVETTP EIDHQNGDDG QSSIPVWDFL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1805824KKKCEVTRHRNDPETNKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.332271e-100callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG340900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825112.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T8IDX40.0A0A2T8IDX4_9POAL; Uncharacterized protein
STRINGPavir.Ga00446.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5