PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG328800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 272aa    MW: 31869.7 Da    PI: 8.089
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG328800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.93.2e-2418100186
             trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W  qe+++Li+ar e+e++  + ++++k+ We+v++++rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  Pavir.7KG328800.1.p  18 QWGAQETRELIAARGEVEREADAaRRSAKTMWEAVAARLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 100
                          7********************9735799************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122037.56E-171783No hitNo description
Gene3DG3DSA:1.10.10.605.0E-41877IPR009057Homeodomain-like
PfamPF138372.9E-2218101No hitNo description
PROSITE profilePS500907.4331976IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMEAGGGGAG GRDERVPQWG AQETRELIAA RGEVEREADA ARRSAKTMWE AVAARLRERG  60
YRRTADQCKC KWKNLVNRYK GKETSDPENG RQCPFFEELH AVFTERARNM QRQLLESESG  120
ASVKRKLKRP IGDRSSGESD GEDDGGEETE DEKPMHIRKR KADDKKQQSQ RMPEKSRTGV  180
SSIHELLQDF LAQQQRIDIH WQEMMERRAQ ERVVFEQEWR QTMQKLEQER LMLEHSWMQR  240
EEQRRMREEA RAEKRDALLT TLLNKLLQED L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.95510.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG328800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.11e-152trihelix transcription factor GT-3b
RefseqXP_025824197.11e-151uncharacterized protein LOC112899804
TrEMBLA0A2T7CZK31e-158A0A2T7CZK3_9POAL; Uncharacterized protein
STRINGPavir.J40572.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-29Trihelix family protein