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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.7KG316000.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
MYB_related |
| Protein Properties |
Length: 448aa MW: 49028.9 Da PI: 8.2148 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7KG316000.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 54 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT++E++l+++a +q+G W++I +++g +t+ q++s+ qk+
Pavir.7KG316000.1.p 54 REKWTEDEHKLFLEALQQHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 98
789*****************88.*********.************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0010600 | Biological Process | regulation of auxin biosynthetic process |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MARFQEIKAT NDRKPAADRI GHADFMDHPK KTLDSPEGPR APKARKPYTI SKQREKWTED 60
EHKLFLEALQ QHGRAWRRIQ EHIGSKTAVQ IRSHAQKFFS KVIRESSGDS NSIAAPPQIY 120
IPPARPKRKP AHPYPRNLGN SLCKDASTIK QLEKPQLKIQ LLSEQENCSP KSVLTTAQID 180
SETMATEGSG SPASSVYMEE KCLTPSTSVG ELGVQVALSK DATTSNGAAC GIPEGPVLRL 240
FGKRVVVNNL HQQPNSDTGN LKHAADMELD ASAETPTSGT GKFSSHGAEE GRTWSPWLTG 300
TQQFMYYLPQ GEVLSVHSAC QFLSYSNVSI SYGVLNPQTV ASKKQQHQPS QASDCKFTKA 360
EGSWAESITT SSSVPETTQN SDSIESSQVN NDDDEVILVP GSRKYLSTVP TYLRGFVPYK 420
KCTAQSKMPQ SHVPGEEADG DMTRLCL*
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