PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG312700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 568aa    MW: 58189.9 Da    PI: 5.1873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG312700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12434477855
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           E+ RR+++++ f++L  llP++     +K +K++i+ +Av YIksL+
  Pavir.7KG312700.1.p 434 TEKERRKKMKNMFSTLHALLPQL----PEKADKSTIVGEAVTYIKSLE 477
                          7*********************6....39*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.637426476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14428493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14431489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.37E-12431481No hitNo description
SMARTSM003537.2E-8432482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9434477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSQEGANLPH EAERSHDHAT APHGSTPTSD GLAIVRSSSN SSSVSKLAGE SNNAGSNPAS  60
SLVVLHAGED NTTESKIAGP AVLDAGKGNN DGSKQLASPA MLHAGEPKDN IDRSKLTSPV  120
VLHAGEDNNT REDDENAGSK MDGPTTLHVS MDSNADAGFK VDSPALLYAG ENDDDSGSKL  180
AIASQPVLHA GEDEDINAGS KLSSPVEIHA GKDNKAAESK LAIQAVPDAG EDSNARSKLS  240
TSVLPCAGEG NDNTSKLAVQ AVIHADEGNN TVSKQVIQAA IHAGEGNNAV SKLAIQSVPH  300
ADEDNNSLSK LARLEVLNAG DDDDDTAASK FAIQAPPHAG EDKLANPAAV GNEGKSDVVG  360
GEGGESAAAT GSSGDGALSK TSKKSTSDDG GGSEDAVVKD GPAAVADDGG TRGRKGKGKG  420
AAAAKKDQAL HIWTEKERRK KMKNMFSTLH ALLPQLPEKA DKSTIVGEAV TYIKSLEGTV  480
QRLEKLKQER MLAQQAAVGA GSSSGAASSH RIHVVAATVS SSPTQKMFFI QARINTAAPP  540
PPMLPENMTV EERYKLAVAE MLHAVGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG312700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872741e-59BT087274.2 Zea mays full-length cDNA clone ZM_BFb0025H05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825310.11e-140uncharacterized protein LOC112900700
TrEMBLA0A2S3I6J31e-145A0A2S3I6J3_9POAL; Uncharacterized protein
STRINGPavir.J18412.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.19e-24bHLH family protein