PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG301100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 375aa    MW: 37348.4 Da    PI: 8.6665
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG301100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.5e-3974134262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+
  Pavir.7KG301100.1.p  74 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 134
                          7899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3170132IPR003851Zinc finger, Dof-type
PfamPF027012.5E-3376132IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05978132IPR003851Zinc finger, Dof-type
PROSITE patternPS01361080116IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDAAHWQQSL GLVKPMEEML MAANAGAAAN TSQGSNPNPP APSSAAGGGA ALRAPAPPAV  60
AGVGSTERRA RPQKEKALNC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN  120
VPVGGGSRKN KRSTSSSASA SASTSASVTS SSMVTTAGAA SKNPKLAHEG AQDLNLAFPH  180
HGGLHVPEFA AFPSLESSNV CNSGGAMAGN GRGGGGGAGP AVGAFSAMEL LRSSGCYMPL  240
QVPMPMPGDY AAAGFALGEF RAPPPPPPPS QSVLGFSLDA HGPGPGAAAA GYGSSAGLPE  300
NAGRLLFPFE DLKPPVSSGG GGVAAGASGG AGDGNSGHHQ FDHNKEQGGG GPPSAGHDTP  360
GFWNGMIGGS GASW*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG301100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824657.11e-175dof zinc finger protein 1-like isoform X2
SwissprotQ9SXG81e-134DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA0A2S3IA671e-174A0A2S3IA67_9POAL; Uncharacterized protein
STRINGPavir.Ga01003.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-42Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]