PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG283500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 692aa    MW: 71892.6 Da    PI: 6.0521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG283500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS154.97.2e-483595853237
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L ++A+a + g+   a+++Larl+++  p g+p+ R a+yf+eAL   l++      +  +++ ts+ +++ +laa+k fs++sP+l+
  Pavir.7KG283500.2.p 359 DELAAAAKAAEVGNSIGAREILARLNQQLPPIGKPFLRSASYFKEALLLALTD-----GHHGSTRLTSPLDVALKLAAYKSFSDLSPVLQ 443
                          7899*************************************************.....6666788888888******************* PP

                 GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          f+++ta qa+l++++    +++ +iDfd++ G+QW+++lq+La R+       p+l++T+++s +s++  el+ t+++L++fA+ lg+pf
  Pavir.7KG283500.2.p 444 FANFTATQALLDEIACTtaSCIRVIDFDLGVGGQWASFLQELAHRRgtgnVTLPMLKLTAFVSTASHHPLELHLTRDNLSQFAADLGIPF 533
                          ************87755559*************************96544459************************************* PP

                 GRAS 177 efnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                          efn++   +l+++++ eL   + +E +aV+l +          +l+     +L+lvk+lsPk
  Pavir.7KG283500.2.p 534 EFNAI---NLDAFDPAELIAPTaDELVAVCLPVGCSART---PPLPM----LLQLVKQLSPK 585
                          ****9...9******99966668********99666554...56666....**********9 PP
2GRAS78.71.1e-24587691264374
                 GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                          ++ l+dsl+a  ++++++++k+Er+l++++++++v  + ++     e+ + Wr+ +++aGF p+pls+ a++qa++ll++v+++g++ve+
  Pavir.7KG283500.2.p 587 CMFLLDSLDAA-GTDADAASKIERFLIQPRVEDAVLGRRRA-----EKPMAWRAVFTSAGFVPIPLSNLAEAQADCLLKRVQVRGFHVEK 670
                          6789****999.8999*******************976665.....9999**************************************** PP

                 GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                              l l+W++ +LvsvSaWr
  Pavir.7KG283500.2.p 671 CGMGLALYWQRGELVSVSAWR 691
                          ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.122331671IPR005202Transcription factor GRAS
PfamPF035142.5E-45359585IPR005202Transcription factor GRAS
PfamPF035143.7E-22587691IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MRAAPFSAEG NGAGTIEALL WPEGKGGGGG GGSLLLVEPT SVLDCGRSPS PPYSTSTLSS  60
SLGGAAGDSS SGVAAVSENS AAATEAPKWA APGEHGGGGG GGGRKEEWAG GELPPIPGTL  120
DVGFGGEEGW DAMLGDAAAA AGQEQTFLNW IMAAPGEMEP PLQHHHQLLG NAAGFGFPAS  180
DPLGFSLQHH PGGGGGGGGG GGGGALSSPG ARSLTSSSKV TSTFGLLPIE APLQTPATTT  240
MPFHDGGADI KPPLLGVPSG SASLLLNQHQ PSPAASFMPL PSFPDHQHQP HLPPPPKRHH  300
SMPDNLFLLQ NQLQPPPQQG LPFPPLHTTA PFQLQPSLQP PRGAMKTTAA AQQQQQLLDE  360
LAAAAKAAEV GNSIGAREIL ARLNQQLPPI GKPFLRSASY FKEALLLALT DGHHGSTRLT  420
SPLDVALKLA AYKSFSDLSP VLQFANFTAT QALLDEIACT TASCIRVIDF DLGVGGQWAS  480
FLQELAHRRG TGNVTLPMLK LTAFVSTASH HPLELHLTRD NLSQFAADLG IPFEFNAINL  540
DAFDPAELIA PTADELVAVC LPVGCSARTP PLPMLLQLVK QLSPKSCMFL LDSLDAAGTD  600
ADAASKIERF LIQPRVEDAV LGRRRAEKPM AWRAVFTSAG FVPIPLSNLA EAQADCLLKR  660
VQVRGFHVEK CGMGLALYWQ RGELVSVSAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-1536469025377Protein SCARECROW
5b3h_D5e-1536469025377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.23291e-164leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG283500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634500.0BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824521.10.0scarecrow-like protein 6
TrEMBLA0A2T8IDF80.0A0A2T8IDF8_9POAL; Uncharacterized protein
STRINGPavir.Ga01057.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-78GRAS family protein