PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG283500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 717aa    MW: 74650.7 Da    PI: 6.0078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG283500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.64.5e-863597163374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L ++A+a + g+   a+++Larl+++  p g+p+ R a+yf+eAL   l++      +  +++ ts+ +++ +laa+k fs++sP+l+
  Pavir.7KG283500.1.p 359 DELAAAAKAAEVGNSIGAREILARLNQQLPPIGKPFLRSASYFKEALLLALTD-----GHHGSTRLTSPLDVALKLAAYKSFSDLSPVLQ 443
                          7899*************************************************.....6666788888888******************* PP

                 GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          f+++ta qa+l++++    +++ +iDfd++ G+QW+++lq+La R+       p+l++T+++s +s++  el+ t+++L++fA+ lg+pf
  Pavir.7KG283500.1.p 444 FANFTATQALLDEIACTtaSCIRVIDFDLGVGGQWASFLQELAHRRgtgnVTLPMLKLTAFVSTASHHPLELHLTRDNLSQFAADLGIPF 533
                          ************87755559*************************96544459************************************* PP

                 GRAS 177 efnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          efn++   +l+++++ eL   + +E +aV+l +          +l+     +L+lvk+lsPkvvv +++ +d+++ sF ++f+++l+ ++
  Pavir.7KG283500.1.p 534 EFNAI---NLDAFDPAELIAPTaDELVAVCLPVGCSART---PPLPM----LLQLVKQLSPKVVVAIDHGSDRGDLSFSQHFMNCLQSCM 613
                          ****9...9******99966668********99666554...56666....*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           l+dsl+a  ++++++++k+Er+l++++++++v  + ++     e+ + Wr+ +++aGF p+pls+ a++qa++ll++v+++g++ve+  
  Pavir.7KG283500.1.p 614 FLLDSLDAA-GTDADAASKIERFLIQPRVEDAVLGRRRA-----EKPMAWRAVFTSAGFVPIPLSNLAEAQADCLLKRVQVRGFHVEKCG 697
                          ******999.8999*******************976665.....9999****************************************** PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                            l l+W++ +LvsvSaWr
  Pavir.7KG283500.1.p 698 MGLALYWQRGELVSVSAWR 716
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.879331696IPR005202Transcription factor GRAS
PfamPF035141.6E-83359716IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MRAAPFSAEG NGAGTIEALL WPEGKGGGGG GGSLLLVEPT SVLDCGRSPS PPYSTSTLSS  60
SLGGAAGDSS SGVAAVSENS AAATEAPKWA APGEHGGGGG GGGRKEEWAG GELPPIPGTL  120
DVGFGGEEGW DAMLGDAAAA AGQEQTFLNW IMAAPGEMEP PLQHHHQLLG NAAGFGFPAS  180
DPLGFSLQHH PGGGGGGGGG GGGGALSSPG ARSLTSSSKV TSTFGLLPIE APLQTPATTT  240
MPFHDGGADI KPPLLGVPSG SASLLLNQHQ PSPAASFMPL PSFPDHQHQP HLPPPPKRHH  300
SMPDNLFLLQ NQLQPPPQQG LPFPPLHTTA PFQLQPSLQP PRGAMKTTAA AQQQQQLLDE  360
LAAAAKAAEV GNSIGAREIL ARLNQQLPPI GKPFLRSASY FKEALLLALT DGHHGSTRLT  420
SPLDVALKLA AYKSFSDLSP VLQFANFTAT QALLDEIACT TASCIRVIDF DLGVGGQWAS  480
FLQELAHRRG TGNVTLPMLK LTAFVSTASH HPLELHLTRD NLSQFAADLG IPFEFNAINL  540
DAFDPAELIA PTADELVAVC LPVGCSARTP PLPMLLQLVK QLSPKVVVAI DHGSDRGDLS  600
FSQHFMNCLQ SCMFLLDSLD AAGTDADAAS KIERFLIQPR VEDAVLGRRR AEKPMAWRAV  660
FTSAGFVPIP LSNLAEAQAD CLLKRVQVRG FHVEKCGMGL ALYWQRGELV SVSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-263577164375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.23290.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG283500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634500.0BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824521.10.0scarecrow-like protein 6
TrEMBLA0A2T8IDF80.0A0A2T8IDF8_9POAL; Uncharacterized protein
STRINGPavir.Ga01057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-90GRAS family protein