![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG278100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 17581.8 Da PI: 4.2295 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.2 | 4.6e-14 | 3 | 39 | 11 | 50 |
AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 +g+Wv+eIr+p++ + r++lg+f+ +e+Aa+a++aa+ Pavir.7KG278100.2.p 3 AWGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAA 39 6**********843...6*********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.96E-13 | 1 | 30 | No hit | No description |
PROSITE profile | PS51032 | 15.685 | 1 | 50 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-23 | 1 | 56 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-23 | 1 | 51 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-15 | 2 | 50 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-8 | 3 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MRAWGKWVSE IREPRKKSRI WLGTFDNPEM AARAHDAAAV AGRAAHLNFP ELAHELPRAA 60 SAAPKDVQAA AALAAATLQA AAAASPVVLS FDNSDAAVAG TAPDQAVEQY EQAAAPDLAF 120 LDVPDFPLDF GYMLSPLPPS YCGSPWDDIA DELCFEEPLL LWEH* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.11109 | 6e-62 | stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG278100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727864 | 4e-84 | KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825378.1 | 6e-69 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A3L6PZN4 | 5e-68 | A0A3L6PZN4_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ga01094.1.p | 1e-91 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16750.1 | 6e-18 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG278100.2.p |