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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG273100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27052.2 Da PI: 10.4093 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.3 | 2e-10 | 140 | 162 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK+vk+s +p s Pavir.7KG273100.1.p 140 LDDGYKWRKYGQKVVKNSLHPSS 162 59****************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-12 | 125 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-9 | 132 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.84 | 135 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-4 | 140 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-7 | 141 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEGSSQFETC LPSLFSPCAL PPPLAPLPNQ HKLLQMPLFQ VQEQGGNHDV MLSSDHHGGL 60 YPLLLPGIPF VVLDAGEAGT SAAKASGEIA STTTTGTFHG SSSWWKGSAA AAGEKARMKV 120 RRKMREPRFC FQTRSDVDVL DDGYKWRKYG QKVVKNSLHP SSLMISPLIM SFACVQELLP 180 VHPQQLPREE ASGAAVGGLP HGDHHLRGAP HPLPLQRRRR RRPHRQLRLQ LALEIDRRRA 240 LAHLI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 123 | ARMKVRRKM |
2 | 206 | 219 | RGAPHPLPLQRRRR |
3 | 215 | 221 | QRRRRRR |
4 | 216 | 224 | RRRRRRPHR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12028 | 1e-48 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG273100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665432 | 2e-62 | EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825009.1 | 1e-85 | probable WRKY transcription factor 12 | ||||
TrEMBL | A0A2S3I943 | 2e-85 | A0A2S3I943_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00648.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 3e-25 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG273100.1.p |