PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG271800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 383aa    MW: 42474.8 Da    PI: 5.1853
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG271800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP788.9e-2558123171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL llt+kf++ll+++++gi++ln+ a++L   dv  ++RRiYDi+NVLe+++liekk +n i wkg
  Pavir.7KG271800.1.p  58 RYDSSLALLTTKFVNLLKQAQDGILDLNSTADKL---DV--QKRRIYDITNVLEGIGLIEKKLRNIICWKG 123
                          6899******************************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-2656125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.7E-3158123IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.58E-1658121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.4E-2160123IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440746.54E-28135240No hitNo description
PfamPF164213.6E-27138238IPR032198E2F transcription factor, CC-MB domain
CDDcd146609.10E-31138239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTNPDFIGGV GSPVRAPVSG KSARTYKSKA KCSKPVPQTP ISNATSSGNP PTPAGPCRYD  60
SSLALLTTKF VNLLKQAQDG ILDLNSTADK LDVQKRRIYD ITNVLEGIGL IEKKLRNIIC  120
WKGLDESGTN LDNDLSFLKN EVENLNLQEQ ALDEQISKMH KELKALTEDE SRQRWLFLTE  180
DDIKGLPCFQ NQTLIAIKAP HWSSVEVPNP DVMTSESFRR RYRIIIRSTM SPIDLYLVSN  240
FEMKSEEKLD DTTTLASHTH LAKRASSVKG PRTKRAGQSR SKEVVVNAQQ IHETPDLNAS  300
YPFEGVLRKI TPSDVDSDAD YWLLTDDDVS ITDMWRTTPE MQWDQIDPHD FLAEEVSTPG  360
PGTLSQQPAA IGEPTAEGPN HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A6e-2553124274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.278110.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG271800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824202.10.0transcription factor E2FA-like isoform X2
TrEMBLA0A2S3I6J10.0A0A2S3I6J1_9POAL; Uncharacterized protein
TrEMBLA0A2T7CUR90.0A0A2T7CUR9_9POAL; Uncharacterized protein
STRINGPavir.Ga01887.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.17e-99E2F transcription factor 3