PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG269200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 736aa    MW: 79256.2 Da    PI: 6.5824
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG269200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.61.1e-3090174187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++fd+lea
  Pavir.7KG269200.3.p  90 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 174
                          8*********************************************************************866665..******985 PP
2trihelix108.83.6e-34478563187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev+aLi++r +++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Pavir.7KG269200.3.p 478 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 563
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.53883147IPR017877Myb-like domain
SMARTSM007171.9E-487149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-488147IPR009057Homeodomain-like
CDDcd122031.93E-2989154No hitNo description
PfamPF138376.0E-2289175No hitNo description
SMARTSM007178.2E-4475537IPR001005SANT/Myb domain
CDDcd122032.41E-30477542No hitNo description
PfamPF138371.2E-23477564No hitNo description
PROSITE profilePS500907.352477535IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MQHQQQHQEG GGSQYGAAPP DMGPFSLPPA SGPMPLSSRP PPSAPQPQPR AASYEELAAV  60
SSGAGAGAGG LDDEMLGGGA GGSSGASSNR WPREETQALI RIRSEMDATF RDATLKGPLW  120
EDVSRKLADL GYKRSAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYRFFD ELEALHAAAP  180
QPQHQLPQAS TAPPLHAFAA PVSAPQPMSS MPPPPPGPMM QPAPISSVAP APAPAPAPVE  240
MPSAPHQPLN LPGFSFSSMS ESESDDESED DDMTAETGGS QDRLGKRKRG GGGKKMMFFF  300
EGLMQQVVER QEEMQRRFLE TMEKREAERT AREEAWRRQE VARLNREQEQ LAQERAAAAS  360
RDAAIIAFIQ RIGGQSVQPP PAIVVPMSVQ TPPPPKQPPR QQHPPPPPSP QATTPQSNKP  420
ISAAPLQQQP KETSHRDAGT PRSAPPTSGA SLELVPVAEQ HVDYGPGGGD GGAASSSRWP  480
KTEVHALIQL RMDLDMRYQE TGPKGPLWEE ISSGMRRLGY NRSSKRCKEK WENINKYYKK  540
VKESNKKRPE DSKTCPYFHQ LEAIYSRKHL RSIAAAAASN VTVAAAAPPV LPEQPNPSRH  600
EIEGKNINDD KRNNGGSGGG APQVPASNGD KAPTTPAAFD ADSGMKKPED IVRGLNEHPP  660
REFTTDETDS DDMGDEYTDD GEEGEDDGKM QYRIQFQRPT NPGGTNSAPA PATTAAAAPA  720
VPTSAPASTF LAMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG269200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825673.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025825674.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3L6PWB50.0A0A3L6PWB5_PANMI; Uncharacterized protein
STRINGPavir.Gb01188.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-39Trihelix family protein