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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG266200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 278aa MW: 28910.2 Da PI: 7.4061 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 177.2 | 9.6e-55 | 28 | 230 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkee............lleelkveeen 81 eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl ++ aa+++l + + ll+e+ +++ Pavir.7KG266200.2.p 28 EQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLCGLLlpTAAAANNQLPFGGGGQqqallsptsphgLLDEMMPFQQA 117 679******************************************999833444555555444433367899999999956666555555 PP YABBY 82 lksnvek..eesastsvssekl......................senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdi 147 l+ + + + + st +s ++ e + +p+ ekrqrvPsaynrfik+eiqrikasnPdi Pavir.7KG266200.2.p 118 LSLPTAEpaSACVSTITSINNScgggnnapvmsamapppppvkpAPPEPQLLPKSTASGNKTEKRQRVPSAYNRFIKDEIQRIKASNPDI 207 54443330033333333333335666666666777888888776666778889988888999**************************** PP YABBY 148 shreafsaaaknWahfPkihfgl 170 +hreafsaaaknWahfP+ihfgl Pavir.7KG266200.2.p 208 THREAFSAAAKNWAHFPHIHFGL 230 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-60 | 28 | 230 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.4E-7 | 177 | 223 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.1E-4 | 182 | 222 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 8.84E-5 | 184 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MMSSVPVPET MFALADQHLA PQQPAAAEQE QLCYVHCKCC DTILAVGVPC SSLFKTVTVR 60 CGHCANLLSV NLCGLLLPTA AAANNQLPFG GGGQQQALLS PTSPHGLLDE MMPFQQALSL 120 PTAEPASACV STITSINNSC GGGNNAPVMS AMAPPPPPVK PAPPEPQLLP KSTASGNKTE 180 KRQRVPSAYN RFIKDEIQRI KASNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQGLKKTS 240 IQSQEGGECM LSKDGLYAAA AAAAAAAAAS TMGIAPF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9404 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG266200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976365.1 | 1e-152 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 1e-110 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-110 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A3L6PYL5 | 1e-154 | A0A3L6PYL5_PANMI; Protein YABBY 5-like | ||||
STRING | Pavir.Ga00891.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-50 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG266200.2.p |
Publications ? help Back to Top | |||
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