PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 279aa MW: 28981.3 Da PI: 7.4061

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG266200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.1	2.6e-55	28	231	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkee............lleelkveeen 81 eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl ++ aa+++l + + ll+e+ +++ Pavir.7KG266200.1.p 28 EQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLCGLLlpTAAAANNQLPFGGGGQqqallsptsphgLLDEMMPFQQA 117 679****************************************999833444555555444433367899999999955555555555 PP YABBY 82 lksnvek..eesastsvssekl......................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPd 146 l+ + + + + st +s ++ e + +p+ ++ ekrqrvPsaynrfik+eiqrikasnPd Pavir.7KG266200.1.p 118 LSLPTAEpaSACVSTITSINNScgggnnapvmsamapppppvkpAPPEPQLLPKSTAsGNKTAEKRQRVPSAYNRFIKDEIQRIKASNPD 207 54433330033333333333335666666666777898888876555667777766658*************************** PP YABBY 147 ishreafsaaaknWahfPkihfgl 170 i+hreafsaaaknWahfP+ihfgl Pavir.7KG266200.1.p 208 ITHREAFSAAAKNWAHFPHIHFGL 231 ********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.3E-63	28	231	IPR006780	YABBY protein
SuperFamily	SSF47095	1.28E-7	169	224	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.5E-4	181	223	IPR009071	High mobility group box domain
CDD	cd00084	8.90E-5	185	221	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MMSSVPVPET MFALADQHLA PQQPAAAEQE QLCYVHCKCC DTILAVGVPC SSLFKTVTVR 60 CGHCANLLSV NLCGLLLPTA AAANNQLPFG GGGQQQALLS PTSPHGLLDE MMPFQQALSL 120 PTAEPASACV STITSINNSC GGGNNAPVMS AMAPPPPPVK PAPPEPQLLP KSTASGNKTA 180 EKRQRVPSAY NRFIKDEIQR IKASNPDITH REAFSAAAKN WAHFPHIHFG LMPDQGLKKT 240 SIQSQEGGEC MLSKDGLYAA AAAAAAAAAA STMGIAPF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9404	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269\|PubMed:17216490, ECO:0000269\|PubMed:17351053}.

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG266200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976365.1	1e-155	protein YABBY 5
Swissprot	Q01JG2	1e-112	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-112	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A3L6PYL5	1e-156	A0A3L6PYL5_PANMI; Protein YABBY 5-like
STRING	Pavir.Ga00891.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG266200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]