PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG264200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 385aa    MW: 40406.6 Da    PI: 8.8158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG264200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-1690137148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W +eEd+llvd v+  G+g+W+  ++  g++R++k+c++rw +yl
  Pavir.7KG264200.1.p  90 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 137
                          79********************************************97 PP
2Myb_DNA-binding52.88.8e-17143188148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++TteE+  ++++++  G++ W+ Ia+ ++ gRt++++k++w+++l
  Pavir.7KG264200.1.p 143 RGPFTTEEHNSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 188
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.25685137IPR017930Myb domain
SuperFamilySSF466892.76E-3087184IPR009057Homeodomain-like
SMARTSM007171.5E-1289139IPR001005SANT/Myb domain
PfamPF002493.3E-1490137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2291144IPR009057Homeodomain-like
CDDcd001671.74E-992137No hitNo description
PROSITE profilePS5129426.601138192IPR017930Myb domain
SMARTSM007171.0E-14142190IPR001005SANT/Myb domain
PfamPF002492.2E-14143188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-26145192IPR009057Homeodomain-like
CDDcd001678.50E-11145188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MPCPFPSSLQ ACRQQQQQVK IRCIYGHRDP PRPINPSAFM ATAPPPSLTC RHCRRHRGRK  60
RESDRRRSVA AAAAAAMGRT PCCDSKGIKK GPWAPEEDKL LVDFVQANGP GNWRMLPKLA  120
GLNRCGKSCR LRWTNYLRPD IKRGPFTTEE HNSILQLHAI VGNKWSMIAA QLPGRTDNEI  180
KNYWNTHLKK QLRQEALAGA DATAAAQLAA AATASSCPAT RHMAQWEAAR LEAEARLSLL  240
SSSAATTVTS ATAASSSSST AAAAEHEAAP DIFLRLWNSA VGESFRCSAS LGQGAAAAHG  300
PAAAAGAPAA LPPATAPSGG GGGGGGDSSA ASTNGTEAAD DYQAFLDMAV EELALLHGRL  360
GVSFSAFPPA DMLAEASCLF APFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28901927108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15361RRHRGRKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG264200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086211e-118AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825374.11e-151transcription factor MYB41-like
TrEMBLA0A2S3I8U31e-154A0A2S3I8U3_9POAL; Uncharacterized protein
TrEMBLA0A2T7CXW31e-154A0A2T7CXW3_9POAL; Uncharacterized protein
STRINGPavir.Ga01101.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-69myb domain protein 17