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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.7KG251700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GRAS |
| Protein Properties |
Length: 380aa MW: 39782.6 Da PI: 8.0561 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7KG251700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 282.6 | 1.1e-86 | 2 | 370 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
+ lL+ecA avs g+l+ a+ +L +l ++asp++ + +Rl+ayft+A+aarl++s+ ++++ l+p ++ + aa+++f++vsP+
Pavir.7KG251700.1.p 2 IALLMECAVAVSVGNLADANGMLLELGQMASPYAsSCGERLVAYFTKAMAARLMSSWVGICAPLAPPCAA------VHAAFRAFYNVSPL 85
689*******************************66779**********************888776665......678899******** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
+f++l++N+aIlea++g++ vHi+D+d+ G lQW++Ll aLa+Rp+gpp lR+Tg+g s+ +l+ tg++La +A++l +pfef
Pavir.7KG251700.1.p 86 ARFAYLACNKAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPLLRVTGFGV----SASALHDTGNQLAGLASKLSIPFEF 171
*****************************988447**************************....9************************ PP
GRAS 179 nvlvakrledleleeL..rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..........adhnsesFle 255
+ vakr d++ + + + gEalaV++ h ++d + ++++lv+ l+Pkv+++veqe a h+++ Fl+
Pavir.7KG251700.1.p 172 YA-VAKRPGDVDAAAAvpSR-RpGEALAVHWLR--HAMYDAAGGDG----ATMRLVRWLEPKVLTLVEQErggapgdgggAGHDHGHFLD 253
**.68888888766652334.36********99..77775555555....5*******************8888877777778888**** PP
GRAS 256 rflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
rf++al++ysalfdsl a+ p+++ r+ vE+ +lgrei nv+a g +r r + l+ W++ l + GF + + a+l+ +
Pavir.7KG251700.1.p 254 RFVSALHHYSALFDSLGASRPADEdASRHLVEHGVLGREIGNVLAVGGPSRSGRDK-LGCWQAELARHGFLRAGGAGR----AQLVAGAC 338
****************88888877699***********************999987.*************87776655....66777788 PP
GRAS 345 k.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
+ + gy+v ++++ v lgWk+ pL++vS W+
Pavir.7KG251700.1.p 339 PpGLGYTVADDHDGTVrLGWKGTPLYAVSTWT 370
88899****88666666**************6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MIALLMECAV AVSVGNLADA NGMLLELGQM ASPYASSCGE RLVAYFTKAM AARLMSSWVG 60
ICAPLAPPCA AVHAAFRAFY NVSPLARFAY LACNKAILEA FHGKRLVHIV DLDVVPGGAL 120
QWLSLLPALA ARPGGPPLLR VTGFGVSASA LHDTGNQLAG LASKLSIPFE FYAVAKRPGD 180
VDAAAAVPSR RPGEALAVHW LRHAMYDAAG GDGATMRLVR WLEPKVLTLV EQERGGAPGD 240
GGGAGHDHGH FLDRFVSALH HYSALFDSLG ASRPADEDAS RHLVEHGVLG REIGNVLAVG 300
GPSRSGRDKL GCWQAELARH GFLRAGGAGR AQLVAGACPP GLGYTVADDH DGTVRLGWKG 360
TPLYAVSTWT WCPSPHAQR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ726962 | 0.0 | KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds. |
