PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG250600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 313aa    MW: 33681.4 Da    PI: 5.0498
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG250600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.11.7e-178862098
                NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++   rikki++adedv +i+  +Pvl+ska elf+ +l  r++  +  +  +t+  s ++++++  +++dfl d+v +
  Pavir.7KG250600.1.p  8 HFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLRDVVSK 86
                         56678***********************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.8E-22472IPR009072Histone-fold
PfamPF008088.0E-151371IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.86E-191888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRKKLDIHFS APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK  60
TVGSSHLKQC IQTYNVYDFL RDVVSKVPDT GTSDAIADDK LGKRRKSEED GSDEELKRTR  120
NDAESLTSNG RGHGRGRGRG RRGGRGAWRE AFTTHEQFVE NQSSKPAGLK VEVANEVSDA  180
TEAKEATPVT SARACLRNID LNLDPVDEDE VAVPPQTQSS APATNSAAAN LELTAPATSS  240
AAANLGLTAP ATSSSAATAG PSVPRSKEGA KLKEFLGGWE LPDMNKMDVD PAQFALSSNH  300
KLDDDEDYDN ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-19272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGHGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.424228e-41callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG250600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681105.11e-171dr1-associated corepressor isoform X3
TrEMBLA0A368QGQ11e-169A0A368QGQ1_SETIT; Uncharacterized protein
STRINGPavir.J00079.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-50nuclear factor Y, subunit C11