 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.7KG250600.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
NF-YC |
Protein Properties |
Length: 313aa MW: 33681.4 Da PI: 5.0498 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG250600.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 55.1 | 1.7e-17 | 8 | 86 | 20 | 98 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++ rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl d+v +
Pavir.7KG250600.1.p 8 HFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLRDVVSK 86
56678***********************************************************************986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MRKKLDIHFS APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK 60 TVGSSHLKQC IQTYNVYDFL RDVVSKVPDT GTSDAIADDK LGKRRKSEED GSDEELKRTR 120 NDAESLTSNG RGHGRGRGRG RRGGRGAWRE AFTTHEQFVE NQSSKPAGLK VEVANEVSDA 180 TEAKEATPVT SARACLRNID LNLDPVDEDE VAVPPQTQSS APATNSAAAN LELTAPATSS 240 AAANLGLTAP ATSSSAATAG PSVPRSKEGA KLKEFLGGWE LPDMNKMDVD PAQFALSSNH 300 KLDDDEDYDN ED*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 130 | 139 | RGHGRGRGRG |