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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7KG245000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 285aa MW: 31053.5 Da PI: 6.6696 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG245000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT +Ed+llv+ v+q+G g+W+++++ g++R++k+c++rw +yl
Pavir.7KG245000.1.p 18 KGPWTSQEDKLLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 65
79********************************************97 PP
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2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
Pavir.7KG245000.1.p 71 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
8999******************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MEGAPLGWGR QEVDGWRKGP WTSQEDKLLV EHVRQHGEGR WNSVSKLTGL KRSGKSCRLR 60 WVNYLRPDLK RGKITPQEES IIVQLHALWG NRWSTIARSL PGRTDNEIKN YWRTHFKKGK 120 PSKNIERARA RFLKQRQEMQ SQQQQQQQLL QLAAGQVVAK DENQDGGGAR TGTTADEDDR 180 GSAVVDDACA APSSPAVAAE AAAAGHHHDE DLIMHDAMDF MCPMSCALLH GAVHQGGGTG 240 SCCGSTASDE YGSGEEDGAT WGSLWNLDGV VVDDAAAAVA CTLW*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK109620 | 1e-130 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |