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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.7KG234000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
FAR1 |
| Protein Properties |
Length: 358aa MW: 41163.2 Da PI: 5.6263 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7KG234000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 62.6 | 1.1e-19 | 12 | 98 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
f+ +Y+ + GF+vrk++ +k+ ++g++ + ++vC +eg+r+e+k+ + + +ra+trt+C+ ++ v +++ +g ++v++l+leHnH l
Pavir.7KG234000.1.p 12 FWISYGGQKGFEVRKRYANKR-KDGTVRSCRYVCANEGHRSEDKRG-HLTTCPRAKTRTDCQVRIGVVLDQeKGIYKVADLVLEHNHIL 98
999*************99987.8888*****************999.9999****************99999***************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MEFKTIDEVW MFWISYGGQK GFEVRKRYAN KRKDGTVRSC RYVCANEGHR SEDKRGHLTT 60
CPRAKTRTDC QVRIGVVLDQ EKGIYKVADL VLEHNHILHL PETSHLMASQ RKISELQGFE 120
IETADDAGIR PKAAHDLASL QVGGSCNLSY TLRDHKNYLR GKHQREMAYG QAESMLMYFQ 180
DKIAENPSFQ YALQLDEEEQ IANIFWVDAK MLIDYAYFGD VVSFDTTFGT NKESRPFGVF 240
VGFNHFRETV NATKHLNEAD EEESNISPKQ KAEDNEKEHS ILADFSACMF EYEDEETFGQ 300
AFNTLRAKAS KQSWLDSIYM VKEKWAECYM KDVFALGMRS TQLSESLNSE TEKAFQI*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC078840 | 0.0 | AC078840.6 Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence. |
| GenBank | AC084023 | 0.0 | AC084023.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
