PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG225200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 328aa    MW: 34413.4 Da    PI: 5.2724
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG225200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.27e-082258437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         r C+ ++ + ++l+C+ +  +lC+ C    H g    H
  Pavir.7KG225200.1.p 22 RPCDACGAEAARLYCRADAAFLCAGCDARAH-GagsrH 58
                         68*************************9999.435667 PP
2zf-B_box21.93.7e-0761103339
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                           + C+ +e+ ++   C+ +   lC++C   +H+       H++
  Pavir.7KG225200.1.p  61 VWLCEVCEHAPAAVTCRADAAALCASCDADIHSAnplarrHER 103
                          679*****************************65777777876 PP
3CCT70.15.6e-24238281144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Pavir.7KG225200.1.p 238 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 281
                          9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.7E-81963IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5231963IPR000315B-box-type zinc finger
PfamPF006435.7E-62258IPR000315B-box-type zinc finger
CDDcd000214.40E-92263No hitNo description
PROSITE profilePS501199.5759106IPR000315B-box-type zinc finger
PfamPF006432.1E-561104IPR000315B-box-type zinc finger
CDDcd000212.59E-762104No hitNo description
SMARTSM003363.1E-864106IPR000315B-box-type zinc finger
PfamPF062039.2E-18238280IPR010402CCT domain
PROSITE profilePS5101716.876238280IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEGAEKSAGG APAPAYWGLG ARPCDACGAE AARLYCRADA AFLCAGCDAR AHGAGSRHAR  60
VWLCEVCEHA PAAVTCRADA AALCASCDAD IHSANPLARR HERQAVAPFY GALADAPKPF  120
ASSAAVPKAA DDDGSNEAEA ASWLLPEPDH GLKEGATTEV FFADSDPYLD LDFARTMDDI  180
KAIGVQNGPA ELDLTGAKLF YSDHSMNHSV SSSEAAVVPD AAAGAAPVVP VVSRGLEREA  240
RLMRYREKRK SRRFEKTIRY ASRKAYAETR PRIKGRFAKR TPGPGGADGE DPLEEHEEEM  300
YSSAAAAVAA LMAPGGADAD YGVVPTY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19190.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG225200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279840.0KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.10.0zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK532e-72COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A2S3I8050.0A0A2S3I805_9POAL; Uncharacterized protein
STRINGPavir.J38013.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.16e-46CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]