PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG212600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 256aa MW: 27335.3 Da PI: 8.8485

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG212600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.2	1.7e-26	50	119	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + ++++ Pavir.7KG212600.1.p 50 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSNARSS 119 **************************************************************99888764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.513	42	106	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.2E-5	43	108	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-6	46	108	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.86E-5	47	107	IPR009057	Homeodomain-like
CDD	cd12203	5.10E-27	48	113	No hit	No description
Pfam	PF13837	1.3E-18	49	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MLLPGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAVASAG SAPKRRAETW VREETLCLIA 60 LRREMDAHFN TSKSNKHLWE AISARMRDQG FDRSPTMCTD KWRNLLKEFK KARSNARSSG 120 GGAGGSGNAK MAYYKEIDDR LRRRGKASGC AGSGSVSGAG KSPTSNTKIE SYLQFTTDNG 180 FEDANIPFGP VEANGRSILN IGDRLEDDWH LLPLTAADAV ATNGVNPWNW RDTSTNGGDN 240 QGTFGGRVIL VKWGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	6e-39	44	136	1	86	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	143	DRLRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1811	0.0	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG212600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146488.1	1e-139	uncharacterized LOC100280076
Swissprot	Q9FX53	4e-80	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	K7TUB3	1e-139	K7TUB3_MAIZE; Trihelix transcription factor GT-1
STRING	Pavir.Ga01561.1.p	1e-172	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	2e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG212600.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]