PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.7KG207300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 419aa MW: 48900.4 Da PI: 10.3393

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG207300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.8	2.3e-15	8	83	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+ e GF +r+ + k+++ + t+++fvCs eg++++++ a+ +t+Cka++++ +++d+ w++++++ HnH+++ Pavir.7KG207300.1.p 8 TYSWEKGFGIRIGRGCKNSK-EYRTRQDFVCSYEGTDKSTTA---------ASIKTECKAMIRLLRQNDHSWYISRVVDTHNHPFS 83 79**********999954.5589******9988654.........59****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-12	8	83	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-24	202	294	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MRRKSSTTYS WEKGFGIRIG RGCKNSKEYR TRQDFVCSYE GTDKSTTAAS IKTECKAMIR 60 LLRQNDHSWY ISRVVDTHNH PFSAGYGENK QWKSHSDIDP LTKDLVKKLR ENNIRICNIL 120 GVSDATSSKT MRKESIRSLC AKLSQENMKD DIGKTMGLLE DMKKTDPGLE VRFQMDSSGA 180 MKTMLWCTGK NRVDYENFGD AITFDTTYRT NLYSLPFGLF IGVNNHFQSI VFRGVLLTSK 240 KTIDFEWAFT NFVEIMNGKA PLTMLTDQCA AMAKAIKSTL RTTRHRWCRW HVLKDAKKKL 300 ANIYSKCKKF KREFNKLITD EIDIRRFENE WVKLLKEYRL VKNKYLKRLF KHRDKWAKPY 360 FMDIFCAGMT STQRSESANH MLKKFIQRAA PMHLFVSKFN ELQSDRHDQE GKEQHSTK*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MRRKSSTTYS WEKGFGIRIG RGCKNSKEYR TRQDFVCSYE GTDKSTTAAS IKTECKAMIR  60
LLRQNDHSWY ISRVVDTHNH PFSAGYGENK QWKSHSDIDP LTKDLVKKLR ENNIRICNIL  120
GVSDATSSKT MRKESIRSLC AKLSQENMKD DIGKTMGLLE DMKKTDPGLE VRFQMDSSGA  180
MKTMLWCTGK NRVDYENFGD AITFDTTYRT NLYSLPFGLF IGVNNHFQSI VFRGVLLTSK  240
KTIDFEWAFT NFVEIMNGKA PLTMLTDQCA AMAKAIKSTL RTTRHRWCRW HVLKDAKKKL  300
ANIYSKCKKF KREFNKLITD EIDIRRFENE WVKLLKEYRL VKNKYLKRLF KHRDKWAKPY  360
FMDIFCAGMT STQRSESANH MLKKFIQRAA PMHLFVSKFN ELQSDRHDQE GKEQHSTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG207300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310926.1	0.0	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1B6Q0S6	0.0	A0A1B6Q0S6_SORBI; Uncharacterized protein
STRING	Pavir.J24972.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-52	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7KG207300.1.p