PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG201700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 626aa    MW: 66708 Da    PI: 7.632
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG201700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-30287344260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g+H h+k
  Pavir.7KG201700.1.p 287 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGTHSHPK 344
                          8****************************************.***************85 PP
2WRKY1054.1e-33500558159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Pavir.7KG201700.1.p 500 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 558
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26281345IPR003657WRKY domain
PROSITE profilePS5081121.54281345IPR003657WRKY domain
SuperFamilySSF1182907.72E-25282345IPR003657WRKY domain
SMARTSM007743.0E-33286344IPR003657WRKY domain
PfamPF031062.5E-23287343IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-37485560IPR003657WRKY domain
SuperFamilySSF1182906.28E-29492560IPR003657WRKY domain
PROSITE profilePS5081137.539495560IPR003657WRKY domain
SMARTSM007744.0E-38500559IPR003657WRKY domain
PfamPF031062.5E-25501558IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MEGHVGMQEG RDPNPGPSSL MRGLQTEAFL PDTEVAKAGF EKDGLSAAIR SPREEGRSLP  60
MTPQFGHKSS PGSTLAERMQ ARAGFRVPKL SMPFSTAVAA DNSVPGAPSP YLTIPPGLSP  120
ATLLDSPVFI SNAMGQASPT TGKLFMLGST NDNDPIRYGG PLLGDGPDSF SFKPLDLKSS  180
HYTAEGKKES LCNNQPPLPS THVSVKTETK IQPVQEANLL GQLNQQNHSR QSNMKSGSHD  240
PNSKLSRLAT VTGAGNDHVS SPHSQPAEEG DTRGDYHPAM AATTPAEDGY SWRKYGQKQV  300
KHSEYPRSYF KCTHPNCQVK KKVERSHEGH ITEIIYKGTH SHPKPAQSRR PGVPPVHPFV  360
EGAQADAPDN PRPHTNTAEA RQAWHNNAGV KDLPGDGMDA ASPPSVPGEL CDSSASMQIH  420
DAGGVDATSA ATAGSDEVDG EDRVTHGSMS QGGGGADADG DELESKRRKL ESYTIDMSAA  480
SRAVREPRVV IQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG CSVRKHVERA  540
SHDLKSVITT YEGKHNHEVP AARNSGGHPS AATAAGAAAG RRPEHPSVHD GLMRHLAGGC  600
GGAPFGLRPA PPSRDPMTPM LNYPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36287561878Probable WRKY transcription factor 4
2lex_A2e-36287561878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG201700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
TrEMBLA0A2T7CW720.0A0A2T7CW72_9POAL; Uncharacterized protein
STRINGPavir.J36042.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-122WRKY DNA-binding protein 2