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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7KG201400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 354aa MW: 38421.3 Da PI: 6.5071 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG201400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60.6 | 3.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +l+ +++q+G+++W++I++ g+ R++k+c++rw +yl
Pavir.7KG201400.1.p 14 RGQWTPEEDNKLLSYITQYGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
89********************************************97 PP
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2 | Myb_DNA-binding | 45.2 | 2.1e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T E++ +++++ G++ W+ Ia+ ++ gRt++++k++w++
Pavir.7KG201400.1.p 68 GEFTDAEEQTIIKLHSVVGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
789******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MGRVPCCEKD NVKRGQWTPE EDNKLLSYIT QYGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGEF TDAEEQTIIK LHSVVGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKSFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRPT DFPSPAVPAM 180 PGIAAPCGFP APPPQQQQQP DDTIERIKMG LSRAIMSDPG ATADKQQQQQ QPPWTPADMP 240 EGLAGMFAAY NPAAHGQEEF RCDNGMVLGG AGREPDRGTS MWSHQSLYSG SSGTEPAARS 300 APPALPERGN DSVGSSGGDE EADGGKGGSD MSSLFGSDCV LWDLPDELTN HMV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}. |
Functional Description ? help
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Source |
Description |
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034238 | 0.0 | BT034238.1 Zea mays full-length cDNA clone ZM_BFc0028K07 mRNA, complete cds. |
GenBank | BT039422 | 0.0 | BT039422.1 Zea mays full-length cDNA clone ZM_BFc0012M19 mRNA, complete cds. |
GenBank | BT040670 | 0.0 | BT040670.1 Zea mays full-length cDNA clone ZM_BFc0113I05 mRNA, complete cds. |
GenBank | BT043240 | 0.0 | BT043240.1 Zea mays full-length cDNA clone ZM_BFc0129J22 mRNA, complete cds. |
GenBank | BT054988 | 0.0 | BT054988.1 Zea mays full-length cDNA clone ZM_BFc0168O09 mRNA, complete cds. |