PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG188900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 332aa    MW: 34770.9 Da    PI: 8.3998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG188900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-21138190156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          ++y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Pavir.7KG188900.1.p 138 PKYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 190
                          79********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-15138189IPR001471AP2/ERF domain
CDDcd000183.49E-30138198No hitNo description
Gene3DG3DSA:3.30.730.101.6E-32139198IPR001471AP2/ERF domain
SMARTSM003804.9E-37139203IPR001471AP2/ERF domain
PROSITE profilePS5103224.105139197IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23139198IPR016177DNA-binding domain
PRINTSPR003671.7E-13140151IPR001471AP2/ERF domain
PRINTSPR003671.7E-13179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEFTGDAEGF GLDFIRDLLL GGDGRGAPVA SPVVSDDVTF PVLQPQPEFQ PMSSFLPQQQ  60
GYGYIDLTRE YTGPAPAAPA AGEAVFRAQE PAPPVMIKFG SEPPSPVSAQ PPLTISVPPS  120
SYAWAGAAAA PAAVEDYPKY RGVRQRPWGK YAAEIRDPKR RGSRVWLGTY DTPVEAARAY  180
DRAAFRMRGA KAILNFPNEV GTRGADLWAP PAPAARSGGA GRRRRDQAEA AAPGGHRRRG  240
GGRGGEKDSE ARGGAAAAAD SGVLYVAFIH VDARDHRLID GDVDERRCGV SLRDAVEREQ  300
LGAVLGGVAG RPAAAIAAVT APDVGISAAH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25140202668ATERF1
3gcc_A2e-25140202668ATERF1
5wx9_A2e-251361991174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG188900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275252e-99KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956405.11e-107ethylene-responsive transcription factor ERF105
TrEMBLK4A0G21e-106K4A0G2_SETIT; Uncharacterized protein
STRINGPavir.Ga01118.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5