PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG180900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 25116.3 Da PI: 6.4122 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 51.5 | 2e-16 | 46 | 87 | 3 | 41 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers 41 Dg+ WrKYGqK++k++++pr Y+rC+++ +C++ k v++ Pavir.7KG180900.1.p 46 DGHLWRKYGQKVIKDAPHPRLYFRCSYRedrHCQASKLVQQV 87 9**************************98889*****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-15 | 30 | 96 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-17 | 37 | 96 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-21 | 44 | 97 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.043 | 46 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-15 | 46 | 95 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
RKQQLNQPYG QGGLSLFSPG PARRDARKRR KDKHTWIKHT LTPYFDGHLW RKYGQKVIKD 60 APHPRLYFRC SYREDRHCQA SKLVQQVTYM YEHTCNEAPV VVPTPGVEAE VEPPASGGGL 120 VLMFGSSGGG SMCLPIICPA AHNVVVMVVP SFPIIESSSS PTPPWTDNED GTLTWDWDSS 180 TYDLLDGHLQ LDDHVQFSGS SLSWNTDGSA LDLQSMGIIE VEGVTF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 31 | RKRRKD |
2 | 26 | 32 | RKRRKDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG180900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978045.1 | 6e-90 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A368RUM4 | 1e-88 | A0A368RUM4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ga01476.1.p | 1e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11529 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80590.1 | 5e-15 | WRKY DNA-binding protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG180900.1.p |