PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.7KG174900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 622aa MW: 70279.6 Da PI: 5.4387

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG174900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	275.5	1.6e-84	242	613	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cA+av++++ a +lL++++++as +gd++qRla++f ++L+arl++++ +l k+l +++ s +e l+a++l+ ++ + Pavir.7KG174900.1.p 242 STLLIRCAQAVDTNNYLVAGELLNQIKQHASTTGDATQRLAQCFSKGLEARLMGTGRQLWKSLMAERLS---AVEFLKAYNLYMSACYFN 328 579**********************************************************999998...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k++++ I + ++g++r+Hi+D++i +QW+ L + La+R+ ++pp+++iT++ ++++ + + e + rL+k+A+elg++f f Pavir.7KG174900.1.p 329 KVAYIFSALSIAQVMKGKSRLHIVDYGIHCAFQWVGLVRWLANREgGPPPEMKITAMCLAQPSsfPVQWIDEQRYRLSKYASELGLTFVF 418 *****************************************55667**8766655559******************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++ +++++e++ +e+L+++ +E+++V+ ++ +l des +s +rd+vL+ +k+++P++++ + +++ ++ Fl rf e l yysa Pavir.7KG174900.1.p 419 EA-ITTEWEKVCIENLNLDADEVVVVSDLFNFSTLKDESIYFDSpnPRDTVLSNIKKMRPNIFIQSILNCSQ-GSCFLSRFREMLFYYSA 506 .6999******************************98877779**************9999998.779********** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 lfd+l++ +prese r+++E+ l+g + n + ceg + ++r e++++W++r ++aG++++pl+ ++k k ++k++ +++ + ee + Pavir.7KG174900.1.p 507 LFDMLDVIVPRESELRSVLEQDLFGSCALNGIGCEGVDLVQRPEKYKRWQSRNQRAGLRQLPLRPVVVKVLKDRVKKHHHKEFLLCEEGQ 596 ***************************************************************************999**** PP GRAS 357 slvlgWkdrpLvsvSaW 373 +l++gWk+r+L++ S W Pavir.7KG174900.1.p 597 WLLQGWKGRALFAHSTW 613 *************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.906	215	594	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-82	242	613	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MAATPEEFFA EGLMEPSPSS PSVFLDLTPI SDPNTADEGQ LSHDDLMLPY ISRMLMEDDI 60 DDKLLCQYSD HPALLLAQQP FTQILSSPST GTNKDDTANK DSMDQGNDLL LASSGDESTL 120 SLALSNSEYV VGEFLKGMEV ANRLLPRDNS FVKDHQMSQI VIRSKRKHME EEVGRTSKIL 180 MMTEVPEETG IHEVLDNMMM AGHDTLVRDM EKLRIAMDIK EEKKSRKGCN KVMTTGDMVD 240 LSTLLIRCAQ AVDTNNYLVA GELLNQIKQH ASTTGDATQR LAQCFSKGLE ARLMGTGRQL 300 WKSLMAERLS AVEFLKAYNL YMSACYFNKV AYIFSALSIA QVMKGKSRLH IVDYGIHCAF 360 QWVGLVRWLA NREGGPPPEM KITAMCLAQP SSFPVQWIDE QRYRLSKYAS ELGLTFVFEA 420 ITTEWEKVCI ENLNLDADEV VVVSDLFNFS TLKDESIYFD SPNPRDTVLS NIKKMRPNIF 480 IQSILNCSQG SCFLSRFREM LFYYSALFDM LDVIVPRESE LRSVLEQDLF GSCALNGIGC 540 EGVDLVQRPE KYKRWQSRNQ RAGLRQLPLR PVVVKVLKDR VKKHHHKEFL LCEEGQWLLQ 600 GWKGRALFAH STWVVDDGSS K*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MAATPEEFFA EGLMEPSPSS PSVFLDLTPI SDPNTADEGQ LSHDDLMLPY ISRMLMEDDI  60
DDKLLCQYSD HPALLLAQQP FTQILSSPST GTNKDDTANK DSMDQGNDLL LASSGDESTL  120
SLALSNSEYV VGEFLKGMEV ANRLLPRDNS FVKDHQMSQI VIRSKRKHME EEVGRTSKIL  180
MMTEVPEETG IHEVLDNMMM AGHDTLVRDM EKLRIAMDIK EEKKSRKGCN KVMTTGDMVD  240
LSTLLIRCAQ AVDTNNYLVA GELLNQIKQH ASTTGDATQR LAQCFSKGLE ARLMGTGRQL  300
WKSLMAERLS AVEFLKAYNL YMSACYFNKV AYIFSALSIA QVMKGKSRLH IVDYGIHCAF  360
QWVGLVRWLA NREGGPPPEM KITAMCLAQP SSFPVQWIDE QRYRLSKYAS ELGLTFVFEA  420
ITTEWEKVCI ENLNLDADEV VVVSDLFNFS TLKDESIYFD SPNPRDTVLS NIKKMRPNIF  480
IQSILNCSQG SCFLSRFREM LFYYSALFDM LDVIVPRESE LRSVLEQDLF GSCALNGIGC  540
EGVDLVQRPE KYKRWQSRNQ RAGLRQLPLR PVVVKVLKDR VKKHHHKEFL LCEEGQWLLQ  600
GWKGRALFAH STWVVDDGSS K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-30	247	614	25	379	Protein SCARECROW
5b3h_A	3e-30	247	614	24	378	Protein SCARECROW
5b3h_D	3e-30	247	614	24	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG174900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825321.1	0.0	scarecrow-like protein 33
TrEMBL	A0A2T7CVF5	0.0	A0A2T7CVF5_9POAL; Uncharacterized protein
STRING	Pavir.Ga01717.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-101	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG174900.1.p