PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG170300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 200aa    MW: 21686.5 Da    PI: 5.0564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG170300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-172675255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Pavir.7KG170300.1.p 26 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 75
                         69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-352689IPR001471AP2/ERF domain
PROSITE profilePS5103223.5122683IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-212684IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-312683IPR001471AP2/ERF domain
CDDcd000185.07E-302784No hitNo description
PfamPF008474.0E-112775IPR001471AP2/ERF domain
PRINTSPR003676.8E-102738IPR001471AP2/ERF domain
PRINTSPR003676.8E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDRMGEQLQM PPMTSSSSSS SSQQQQYRGV RKRKWGKWVS EIRQPGTKTR IWLGSFESAE  60
MAAVAHDVAA LRLRGRDAQL NFPACVAWLP RPATTRPGDV RAAAAAAADR VRCDPALLLL  120
QQQAAAARCR HDELDLDLVG AAGQLLGGSD EEFELDLDSP RLWAEMAEAM LLDPPGWATG  180
VGDAEVAQCW SHGSLWDAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-172286166ATERF1
3gcc_A4e-172286166ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG170300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581601e-169EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975709.11e-101ethylene-responsive transcription factor ERF027-like
TrEMBLA0A3L6PYF51e-101A0A3L6PYF5_PANMI; Uncharacterized protein
STRINGLPERR04G10650.17e-68(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-26ERF family protein