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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG159600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 306aa MW: 31704.4 Da PI: 7.2512 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.2 | 8e-28 | 25 | 72 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +YkeC++NhAa++Gg+a+DGCgE+mps +++ lkCaACgCHR+FHRr+ Pavir.7KG159600.1.p 25 KYKECMRNHAAAMGGQAFDGCGEYMPS-----SPDQLKCAACGCHRSFHRRDA 72 7*************************9.....7899***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 4.6E-24 | 25 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.0E-23 | 25 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-20 | 25 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.171 | 26 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.26E-18 | 174 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-29 | 176 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 185 | 242 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MMEMDQHQLS MVPYEGAGAG GGGGKYKECM RNHAAAMGGQ AFDGCGEYMP SSPDQLKCAA 60 CGCHRSFHRR DAGSSSCGGA APPVFFRPPP APLPALLPAP PPHYQHHHHH HHQAALQAFL 120 PWVPAAAAPP HLALPYHPAA AAPWLARSGS ETPPRADDFG VAGLGLGGAA GSAGGAGSGG 180 GGFGRKRFRT KFTPEQKERM REFAAKQGWR IQRNDDGALE RFCDEIGVKR QVLKVWMHNH 240 KNQLASTSPA AAGIGISPAA AGIGIRPAAP GMGAGDGDDD DDDDETDDSP PRAAVSSPSP 300 SPISV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-24 | 186 | 247 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG159600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975654.1 | 1e-103 | zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q7X7N3 | 3e-73 | ZHD8_ORYSJ; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A368RTW7 | 1e-102 | A0A368RTW7_SETIT; Uncharacterized protein | ||||
STRING | OMERI04G10740.1 | 6e-75 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13649 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 5e-24 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG159600.1.p |