PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG126500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 21575.2 Da PI: 11.4509 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37 | 4.4e-12 | 21 | 62 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i++ r t+ +Rr+g+ KKA ELS LC++++av+ ++ g Pavir.7KG126500.1.p 21 IDEAGSRARTLKRRRKGLKKKARELSKLCGVDIAVVCTGPGG 62 566667889****************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.97 | 11 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.2E-9 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-16 | 12 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-13 | 21 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MSGIVQPLPA IPRDKIDIAL IDEAGSRART LKRRRKGLKK KARELSKLCG VDIAVVCTGP 60 GGGSVPDVWE FGSAAVIGRY RRLPADKRAK HTHLNYLNAK LGKVRKEQAK LAKQGQEGPK 120 KLASPGAALL KGMNLEELLG SIDAALLATT QRRKALGLPD DASPQVAKGP RSSAAAWMTT 180 WRPGSTSSRG TASTRIIRLM PA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG126500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640115.2 | 2e-33 | uncharacterized protein LOC4324340 | ||||
TrEMBL | A0A2S3HNS3 | 1e-80 | A0A2S3HNS3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00479.1.p | 2e-95 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4572 | 29 | 60 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG126500.1.p |