PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG115200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1044aa    MW: 116661 Da    PI: 6.6085
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG115200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.75.9e-55411563117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl+++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n
  Pavir.7KG115200.1.p  41 EEaRTRWLRPSEVYYILQNHERFPITHEAPKEPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQN 130
                          5569************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p fqrrc+w+Le ++e+ivlv+y+ev
  Pavir.7KG115200.1.p 131 PCFQRRCFWMLEPAYEHIVLVQYREV 156
                          ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.61336162IPR005559CG-1 DNA-binding domain
SMARTSM010767.4E-6939157IPR005559CG-1 DNA-binding domain
PfamPF038599.3E-4742155IPR005559CG-1 DNA-binding domain
PfamPF018331.5E-5467537IPR002909IPT domain
Gene3DG3DSA:2.60.40.105.8E-6467556IPR013783Immunoglobulin-like fold
SuperFamilySSF484031.09E-15494542IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.09E-15662759IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.5E-16662757IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.016664756IPR020683Ankyrin repeat-containing domain
CDDcd002042.27E-9669756No hitNo description
PfamPF127961.4E-6680757IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.301697729IPR002110Ankyrin repeat
SMARTSM002489.7E-5697726IPR002110Ankyrin repeat
SMARTSM0001527817839IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602818847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712876905IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.98E-6876923IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001517877897IPR000048IQ motif, EF-hand binding site
PfamPF006120.016878896IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6898920IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731899927IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-5900920IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MKAADVIKII WSVWSNSCSI PTNWGSNSSF GFGFDINVLR EEARTRWLRP SEVYYILQNH  60
ERFPITHEAP KEPPSGSLFL YNRRVNRYFR RDGHTWRRKK DGRTVGEAHE RLKVGNVDAL  120
SCYYAHGEQN PCFQRRCFWM LEPAYEHIVL VQYREVAEGR YYSSQLSNGP PESLSSLGYP  180
HAIYGNQYLS STSGTSEGSE SHQSYSNLSS VTEVSSYSGN KEYNKGGGSL LSIPELGQTC  240
REQTTEVHGA DNGNSKNKSG LNVALKKIAE QLSLGDDDDD DYIYTNQVQP LGLATNIEPT  300
DKKDDNQIKQ IQPEGTQKGL GRNIAPSWED VLHSSSGLPT PSIYQSDVQY QQNSEYHPPG  360
SLDSSDLRIQ LSAAKRFLLG PEASIDSPSL NFMLRSKENG RTDILSAHES RLQSFLNTDW  420
KTKAPLTFQS NSQGSEITEL LFDRGQLEPY SRADTRLTLG QIKQFNIREI SPEWAFSYEI  480
TKVIITGDFL CDPSNLCWAV MFGDSEVPAE IVQLGVLRCH TPLHSSGKLR VCITSGNREV  540
CSEFKEFEFH SKPTSSGFSD LAPSSRSLKS SEELLFLAKF ARMLLSENGS SEVPDSDPQS  600
GQCPKLRMNE ELWDRLIDEL KLGCENPLST VDQIMEELLK SRLQQWLSVK LKGFNGTASS  660
LSKHDQGIIH LISALGYEWA LSSVLSAGVG LNFRDSNGWT ALHWAAYFGR EKMVAALLAA  720
GASATAVTDP TAQDPVGKTA AFLASQRGHT GLAGYLSEVS LTSYLASLTI EESDVSKGSA  780
EIEAERAVES VSQRSAQLHG GTEDELSMKD SLAAVRNAAQ AAARIQNAFR AFSFRKRQQK  840
TARLRDEYGM TQEDIDELAA ASRLYHQAHA SSGQFYDKAA VSIQKKYKGW KGRKHFLNMR  900
RNAVKIQAHV RGHQVRKKYR TIVSTVSVLE KVILRWRRKG HGLRGFRAEK QPMVGAVEED  960
DEEDDDFDDD EAVKVFRRQK VDQAVKEAVS RVLSMVDSTE ARMQYRRMLE EFRRASAELG  1020
GSHEATSIFD SDLELLGINN FML*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166890.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG115200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823460.10.0calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A2S3I6470.0A0A2S3I647_9POAL; Uncharacterized protein
STRINGPavir.Ga01952.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-145Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains