PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG106000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GeBP | ||||||||
Protein Properties | Length: 253aa MW: 27470.4 Da PI: 10.1676 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 44 | 6.1e-14 | 49 | 143 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 r+wse De+ +L Gl ++a++g+ p+ ++a e ++ +++++ +++ eK+rrL+ K+ + ++ e + +++ +el Pavir.7KG106000.1.p 49 VRVWSEADEVRILEGLAAYAADHGAPPVRsQLHAALE-GRRLDKAEFTVTEIYEKVRRLRTKYCNLRDArGPPVPEGGADDADEVRKYEL 137 69***********************888835555555.56777999*****************999887456677778888999999*** PP DUF573 92 skkiWg 97 s iWg Pavir.7KG106000.1.p 138 SAAIWG 143 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-17 | 49 | 143 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MPPAMSGAPD SPREAILLLP APDAAWEKAP RAASQPRAGR GKKPAVGPVR VWSEADEVRI 60 LEGLAAYAAD HGAPPVRSQL HAALEGRRLD KAEFTVTEIY EKVRRLRTKY CNLRDARGPP 120 VPEGGADDAD EVRKYELSAA IWGDQPANVA KKGRSSSAGA MPPKAGGAGA RVRRGFEELQ 180 GLFPNLASKV DKITNDETLQ PVLKRAFELI DDQKAGELDA KVKKHKIREV QAKMNRDALR 240 VEVFKTLIRS MD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.21008 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG106000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825722.1 | 1e-140 | uncharacterized protein LOC112901104 | ||||
TrEMBL | A0A2S3I504 | 1e-138 | A0A2S3I504_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J29943.1.p | 1e-178 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14621 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 4e-08 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG106000.1.p |